PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g050330.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 127aa    MW: 13854.3 Da    PI: 8.422
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g050330.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.4e-083249724
                      SGGGGTS--TTTTT-SS- CS
           zf-CCCH  7 rffartGtCkyGdrCkFa 24
                      ++++r GtCk+G++CkF+
  Pd.00g050330.m01 32 QYYMRRGTCKFGASCKFH 49
                      59***************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MLGLNLGWFF SSLPPRSSNP LALGCAVILC WQYYMRRGTC KFGASCKFHC LKQGGSSGCP  60
ANLIINGIVV VTIKVAAMWL DPSKHLGKEI TSLHNCICRL YGSSVCGEGG EYETLTLNCL  120
LFVNHNH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.12e-07C3H family protein