PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g054570.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 96aa    MW: 10955.7 Da    PI: 8.6559
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g054570.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.64e-28895187
            DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87
                      +C aCk+l+++C+++C++apyf +e+   +f  +h +FGa++++++l+ lp +er  a  ++++eA+ara dP+yGa++ il+lq+q+
  Pd.00g054570.m01  8 PCRACKFLKQRCKRGCIFAPYFLHEEaITDFSSIHNVFGANKMSRILSMLPMSERAVASWTMTFEAHARAVDPIYGATSYILDLQEQV 95
                      7*********************998846**********************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    
MSSRTFNPCR ACKFLKQRCK RGCIFAPYFL HEEAITDFSS IHNVFGANKM SRILSMLPMS  60
ERAVASWTMT FEAHARAVDP IYGATSYILD LQEQVN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.16e-35LBD family protein