PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g057910.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 222aa    MW: 25077.8 Da    PI: 4.3388
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g057910.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.92.1e-308105197
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+l+++C+++C++apyf +e+   +f  +h +FGa++++++l+ lp +er  a  ++++eA+ara dP yG+v+ il+lq+ql+++++
  Pd.00g057910.m01   8 PCGACKFLKQRCKRGCIFAPYFMHEEaITDFSSIHNVFGARKMSRILSMLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQLDEAHE 100
                       7*********************999856***************************************************************** PP

            DUF260  93 elall 97 
                       +la++
  Pd.00g057910.m01 101 QLARA 105
                       *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MSSRTFNPCG ACKFLKQRCK RGCIFAPYFM HEEAITDFSS IHNVFGARKM SRILSMLPMS  60
ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQLDEAHE QLARAVAPVA NPNQDLENSN  120
EQSEVANPTE QAAVAKPTEF ESLPQFSFTH TNNVDNENMN LNYHVSGSYK NTVNIPTENV  180
ADGWVNNEGT SSMSFFDMEW SFEDVDELLV DPWFSTYISN IN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-36LBD family protein