PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g057920.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 204aa    MW: 22976.8 Da    PI: 4.8748
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g057920.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.7e-29101101100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+l+++C+++C++apyf +e+   +f  +h +FGa++++++l+ lp +er  a  ++++eA+ ra dP+yGa++ il+lq+q+ + +a
  Pd.00g057920.m01  10 PCGACKFLKKRCKRGCIFAPYFMHEEaITDFSSIHNVFGANKMSRILSMLPMSERAVASWTMTFEAHDRAVDPIYGATSYILDLQEQVLNIQA 102
                       7*********************999856***************************************************************** PP

            DUF260  93 elallkee 100
                       +l+++ e+
  Pd.00g057920.m01 103 QLDEAYEQ 110
                       **988766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSSRTRTFNP CGACKFLKKR CKRGCIFAPY FMHEEAITDF SSIHNVFGAN KMSRILSMLP  60
MSERAVASWT MTFEAHDRAV DPIYGATSYI LDLQEQVLNI QAQLDEAYEQ LACAIAPVAD  120
PNQDLENSIE QSEVANPTEQ AAVAKPTEFE SLPQFSFTHT NNVYNENMNL NYHVSGSYKN  180
TVNIPTENVA DGWVNNEVKV YARM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-39LBD family protein