PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g058610.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family YABBY
Protein Properties Length: 219aa    MW: 24407.7 Da    PI: 8.4007
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g058610.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY226.19.1e-70131822170
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaae.shldeslkee..lleelkveeenlksnvekees 91 
                       d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      + + +hl++s+  +    ++l  e  n   n  ++++
  Pd.00g058610.m01  13 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQfHHLGHSFFSSpnNSHNLLEEIPNPAPNFLMNQT 105
                       577899****************************************87776654444432456666544322333333333444444444444 PP

             YABBY  92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       + ++ ++   ++   +e+pr+p + rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl
  Pd.00g058610.m01 106 SVNDFAVR--PRGGADELPRPPAITRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 182
                       44444442..688899*************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSSSSSASTL SLDHLPPSEQ LCYVHCNICD TVLAVSVPCT SLFKTVTVRC GHCTNLLPVN  60
MRGLLLPSPN QFHHLGHSFF SSPNNSHNLL EEIPNPAPNF LMNQTSVNDF AVRPRGGADE  120
LPRPPAITRP PEKRQRVPSA YNRFIKDEIQ RIKSVNPDIS HREAFSAAAK NWAHFPHIHF  180
GLMPDQTVKK TNVRQQEGED VLMKDGFFAS ANNVRVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-79YABBY family protein