PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g066070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 382aa MW: 41863.8 Da PI: 8.6713

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g066070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g066070.m01 89 FVCEICNKGFQRDQNLQLHRRGH 111 89*******************88 PP
2	zf-C2H2	12	0.00064	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g066070.m01 166 WKCDKCSKIYAVQSDWKAHSKTC 188 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD TNISPHQSDH QHPHPTNKIK 60 KKRSLPGNPD PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR 120 NNKDQIKKRA YVCPEPSCVH HHPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKIYAVQSD 180 WKAHSKTCGT REYRCDCGTL FSRKDSFITH RAFCDALAEE SAKLTHPSSK PSTSSAHLSA 240 TALLQKAATV GSASSAAASA GQQDQSAGLT VGEFGTASHM NMISTDYLGE FTSGDLATWQ 300 KTDRLTRDFL GLTGDGTGNH NVGAVNVVKD MLTYAGGVEF HQQQQQPYDQ PLRGHNNSLL 360 LKPQGFGFAE TTAAASETWG DC

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD TNISPHQSDH QHPHPTNKIK  60
KKRSLPGNPD PDAEVIALSP KTLLATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
NNKDQIKKRA YVCPEPSCVH HHPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKIYAVQSD  180
WKAHSKTCGT REYRCDCGTL FSRKDSFITH RAFCDALAEE SAKLTHPSSK PSTSSAHLSA  240
TALLQKAATV GSASSAAASA GQQDQSAGLT VGEFGTASHM NMISTDYLGE FTSGDLATWQ  300
KTDRLTRDFL GLTGDGTGNH NVGAVNVVKD MLTYAGGVEF HQQQQQPYDQ PLRGHNNSLL  360
LKPQGFGFAE TTAAASETWG DC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-114	C2H2 family protein