PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g068060.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 387aa MW: 42114.9 Da PI: 8.7888

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g068060.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.6e-11	45	71	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG rC+++H++ Pd.00g068060.m01 45 PGVPNCVYYMRTGFCGYGIRCRYNHPR 71 5789*********************96 PP
2	zf-CCCH	41.3	2.6e-13	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Pd.00g068060.m01 92 EPICQYYLKTGTCKFGASCKFHHPK 116 799********************96 PP
3	zf-CCCH	36.7	7e-12	137	162	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++++tG+Ck+G +CkF+H++ Pd.00g068060.m01 137 GENECSYYLKTGQCKFGITCKFHHPQ 162 6789********************97 PP
4	zf-CCCH	37.2	4.8e-12	293	319	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H++ Pd.00g068060.m01 293 PGEPECQYYLKTGDCKYGPSCRYHHPR 319 5799*********************96 PP
5	zf-CCCH	35.8	1.3e-11	340	364	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ Pd.00g068060.m01 340 GVQPCTFYLQNGHCKFGSTCKFDHP 364 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MELYGRSPAR NGSNQEWSPG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG 60 YGIRCRYNHP RDRAAVVASV RATGDYPERV GEPICQYYLK TGTCKFGASC KFHHPKHGGG 120 SLSRAPLNIY GLPLRPGENE CSYYLKTGQC KFGITCKFHH PQPAGTTIPS SAPQFYPSVQ 180 SPSVPMAEQF GGASTGLRVP RPPLLPGSYV QGTYGPVLIS PGVVPIQGWS PYSAPLSPVL 240 SPGAQPTVGA TSLYGVTQLS SPTHGLARPY TSVPSAVGPS SSSPSEQVFP ERPGEPECQY 300 YLKTGDCKYG PSCRYHHPRD RVVPRTNCLL SPIGLPLRPG VQPCTFYLQN GHCKFGSTCK 360 FDHPIGTMRV DRFHYLMCNT PVRLLSL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MELYGRSPAR NGSNQEWSPG AGETGLEEQM WQLGLTSSES YPERPGVPNC VYYMRTGFCG  60
YGIRCRYNHP RDRAAVVASV RATGDYPERV GEPICQYYLK TGTCKFGASC KFHHPKHGGG  120
SLSRAPLNIY GLPLRPGENE CSYYLKTGQC KFGITCKFHH PQPAGTTIPS SAPQFYPSVQ  180
SPSVPMAEQF GGASTGLRVP RPPLLPGSYV QGTYGPVLIS PGVVPIQGWS PYSAPLSPVL  240
SPGAQPTVGA TSLYGVTQLS SPTHGLARPY TSVPSAVGPS SSSPSEQVFP ERPGEPECQY  300
YLKTGDCKYG PSCRYHHPRD RVVPRTNCLL SPIGLPLRPG VQPCTFYLQN GHCKFGSTCK  360
FDHPIGTMRV DRFHYLMCNT PVRLLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-176	C3H family protein