PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g077300.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 375aa MW: 42335 Da PI: 7.6147

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g077300.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.8e-05	215	234	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Pd.00g077300.m01 215 FSCPLCFKTFNRYNNMQMHM 234 89*****************9 PP
2	zf-C2H2	14.4	0.00011	299	321	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Pd.00g077300.m01 299 FMCRKCGKAFAVRGDWRTHEKNC 321 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MTDPYSNYFN NGRFNLNPLH HISSPSAPSS INPYNFHAPP NYRDYNNFCS SNNLMVHNQS 60 FFINHHQSSS SSSSPPSPPL REALPLLSLS PSRHHHPHED LQEPSFNAME ADHQNNNNNS 120 RKDSADHQSL VVSSSADIVD QDEDDETVTV ALHLGLPSRT LSADLISRLS SPEISSDKEV 180 VDVTVASAGY APNRLNKGQY WIPTPAQILI GPTQFSCPLC FKTFNRYNNM QMHMWGHGSQ 240 YRKGPESLRG TQPTAMLRLP CYCCAPGCRN NIDHPRSKPL KDFRTLQTHY KRKHGIKPFM 300 CRKCGKAFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIKAFGHGH AAYGIDCFEE 360 DDDAASEIEE NYSSQ

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MTDPYSNYFN NGRFNLNPLH HISSPSAPSS INPYNFHAPP NYRDYNNFCS SNNLMVHNQS  60
FFINHHQSSS SSSSPPSPPL REALPLLSLS PSRHHHPHED LQEPSFNAME ADHQNNNNNS  120
RKDSADHQSL VVSSSADIVD QDEDDETVTV ALHLGLPSRT LSADLISRLS SPEISSDKEV  180
VDVTVASAGY APNRLNKGQY WIPTPAQILI GPTQFSCPLC FKTFNRYNNM QMHMWGHGSQ  240
YRKGPESLRG TQPTAMLRLP CYCCAPGCRN NIDHPRSKPL KDFRTLQTHY KRKHGIKPFM  300
CRKCGKAFAV RGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIKAFGHGH AAYGIDCFEE  360
DDDAASEIEE NYSSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-121	C2H2 family protein