PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g078040.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 318aa    MW: 34580.5 Da    PI: 10.3543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g078040.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.88.9e-06209231123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C  CgksF + s L  H+++H
  Pd.00g078040.m01 209 YTCFECGKSFASGSALGGHMSSH 231
                       9********************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MIRSYQPRPP GLIMSNPHMM IRETHVPVQP TQTGPTFPNH TLNLNFMRFQ PPRVALAPHF  60
PLNNISSPTA LSGFHGRTGV MRNQQSSSQT YHYGNISPNP IMNAATRFRP PPSFSSNINI  120
GRASIMNDNQ ISLPTLVRAT RFPTSSQSQF VPDHEPSTSS SIIKEEPGDD HQQTHVARES  180
TTTTVAAAAS IAIATKSSQP PRPKPMGEYT CFECGKSFAS GSALGGHMSS HAKKRKLEAA  240
TSGKRFKPGD SFFDYVHHSP GFENGSSSRT ATNPPTMSIN GPSGPSTNEG TKGIEEPSGK  300
REEKKSKDGD EERPTSRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300307KREEKKSK
2300308KREEKKSKD