PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g078060.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 351aa    MW: 37837 Da    PI: 6.9178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g078060.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-05176199123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       y+C++C ++F ++  + +H r+ H
  Pd.00g078060.m01 176 YTCSKCRRVFETSQFFASHARSvH 199
                       9********************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MPRSRVHIHT FIDINEPAAA QGLGGSPHLL LAQPSRNSPH LLLAQPSSSS SLRAREEPPT  60
VISIESDDDV SSSDDEPIVA EPISVYIPTP QPKPSEYQSK EPTPEAPTNF QNLNSPNSDD  120
ARRDQSNGQR ELPPSGGDGD VGDLLVVPDE HVDQVAVCDL GDGKTRSLKH DKNGPYTCSK  180
CRRVFETSQF FASHARSVHP RSPEEIARGE ALKADRKSKK RSASMKEKDP EPKQKRSRVS  240
KKSVTMKEKD QEQVVAASGF AGYGSGGADS TVTIVLPHGE SYSHETIRAK KRKARSMNVP  300
AAVAPDSGGA GDGQVGVKIG KKKDSEKAGP SGYGGMDFEG LYEVEVQMEH K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.13e-09C2H2 family protein