PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g083410.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 986aa    MW: 108555 Da    PI: 5.7552
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g083410.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.9e-081171331127
                       GTS--TTTTT-SS-SSS CS
           zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                       +tGtCk+G++CkF+H++
  Pd.00g083410.m01 117 ATGTCKFGPNCKFNHPR 133
                       59*************96 PP
2zf-CCCH28.13.4e-09195215626
                       -SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                       C  +++tGtC++G+rCkF+H+
  Pd.00g083410.m01 195 CWSYLKTGTCNFGPRCKFNHP 215
                       668*****************8 PP
3zf-CCCH31.43.2e-10745767426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C+++++tGtCk+ ++CkF+H+
  Pd.00g083410.m01 745 PDCSYYLKTGTCKFRSNCKFNHP 767
                       78********************8 PP
4zf-CCCH29.41.3e-09814839126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C++++r+  C yG +C+F+H+
  Pd.00g083410.m01 814 PGERDCPYYMRNLSCGYGLSCRFNHP 839
                       5789*********************9 PP
5zf-CCCH24.35.6e-08913939127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C +f+ tG Ck+ ++Ck++H++
  Pd.00g083410.m01 913 PGQPVCIYFSTTGDCKFKSNCKYHHPK 939
                       5789*********************96 PP
6zf-CCCH21.34.6e-07960984226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++ +C  ++ +G+C+ G+ CkF H+
  Pd.00g083410.m01 960 GQNICTQYSTYGICNSGPACKFDHP 984
                       6789********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 986 aa     Download sequence    
MLPAAAVRVL LPVSASVIYL IYRYLRSGRQ IESSPNTSNN DVVPPPNSGN SDVVPYPELS  60
DRDCTILEEI LKDNHVLLDK ILALEPAFLD GLRKIKPAVL REMVFDPAEL DPVIVDATGT  120
CKFGPNCKFN HPRITTKNNQ NSFRSGGRRP NLYTTPNPSD PDHENGNGNK TQSEERDEER  180
SRIHHYPVRF EAGDCWSYLK TGTCNFGPRC KFNHPCRRKN GKNNQNYFRS GGCEPGNAFS  240
FNPRRGEPSV APVQKLNFMD LPIRPGEKEC PCYMKNGFCK SATNCTFNHP DPTTIGESGP  300
PFGYIDGGPA PVQGASSSTA WDSLCVPMIP PSQGIPSQNT EWNGSQDPEY LPERSIPAPP  360
PFVMNKGVTE TNIYEQNPQQ KQVEEFPERP GQPICNYFLR KGDCKYHHPK NQTAVSPSCA  420
LSDKGLPLRP GENICTQYSS YGICNSGPAL TLPAAAVAVR LLLPVSVSVY VLYKYWRSRR  480
RTESWVPTSR GNNDDVPPNS GDNGVVPPNS VVRPKSGKND VVPSDGDLAI VEEILKNDHV  540
FLDKIRTLDP AVLDELLKFD PVALDALLRI DPAVLRESAE LDPAIIDAIC ELSEKEEGDE  600
EANWSCSRLV TESSLVIGVP TNSGNNDVVP SNSGNNDVVP SNSGNNDVVP PNSGNNDVVP  660
PNSGNNDVVP CPELSDRDLA ILEEILKDDP VLLHEIRTHD PAVINELRKF DPAVLREMVL  720
DSAESQERDE EISRSRHYPL RPEAPDCSYY LKTGTCKFRS NCKFNHPHTT TKNNQDDFWS  780
GGRKDGRDGS FNPRSREPFA APFVENFMGL PIRPGERDCP YYMRNLSCGY GLSCRFNHPD  840
PTPAGESDPP SGYGDGGPAS LQGASSSTAA RWSAPRSLNN APLIITPSQG IPSRNTEHNG  900
YQQQQVEELP QRPGQPVCIY FSTTGDCKFK SNCKYHHPKN QTAVSPSCAL NDKGLPLRPG  960
QNICTQYSTY GICNSGPACK FDHPSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.15e-69C3H family protein