PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g083420.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 836aa MW: 92999.4 Da PI: 8.1729

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g083420.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	1e-05	631	655	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C +G +C+F+H+ Pd.00g083420.m01 631 GEKDCPCYMRTLSCMHGTKCRFNHP 655 7789********************9 PP
2	zf-CCCH	19.7	1.5e-06	763	789	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g083420.m01 763 PGQPVCLYFSRAGDCKHKSNCKYHHPK 789 57899********************96 PP
3	zf-CCCH	22.5	2e-07	810	834	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++++G+C+ G CkF+H+ Pd.00g083420.m01 810 GQKICARYSAYGICNSGLACKFNHP 834 7899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 836 aa Download sequence
MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD 60 ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE 120 DEEVAERSTC SGRQTNDNGG EVMKIGEERS RSQHYPVRPE AGEGKRGRKN RKNRKNRKNN 180 QNYFSSGGQH PNLYASPNPG NDDVLSPNPG KVNTVLQVYP AELDPAIIDA ISKLSLKEKE 240 EGEQEVEVVK KVDDERSRRH HYPVRPPGAG DSSHNIKTGT HQFGSNCKFN RTRRSKNNQV 300 SKEKMKEREG LAEKPGQTEC KNYFGSGGQR QNRYAPPNPG NDGVLPPNPG KDDVLPANHG 360 DTDCDLATLR EILRHKTALL GIIRKLDAGL FSDIQKIDPA VLREMQANPA EWDPAIIDPI 420 CKLSLEEKDE SEEEVEVSCG GPETEIRNEN RYKTQSEERD GGGGENKNEN GGEVQKKVDE 480 ERSRRHHYPV RPPGPGDSSH NLKTGTHQFG SNCKFNLTRR SKNNQVSKNK MKEREGLAEK 540 PGKTECKVSK DKMKEREGLA EKPGKTECKV SKNKMKEREG LAEKPGKTEF KNYFRSGGRE 600 SGNACALNPR RGEASVAPIL ENFMGLPIRP GEKDCPCYMR TLSCMHGTKC RFNHPDPTPA 660 GESDPPSGNG NGGPASLQGA SSETAAQWYA PISLNNASLY EPIMIPPSQE FPSQNTEWNG 720 YQAPERSMPA PPPSYVMNHS VTETNTYGQY PQQKQVQEFP ERPGQPVCLY FSRAGDCKHK 780 SNCKYHHPKN KTAVPPSCAL SDKGLPLRPG QKICARYSAY GICNSGLACK FNHPSL

Sequence ? help Back to Top

Protein Sequence Length: 836 aa Download sequence

MLTAPIGLPN PDVPPNAELS DLDLAILEEI RKLDALLEKI RKLDPALLDK IRKFDPDVLD  60
ELRKIDPALL DGVRKVHPTL LDELRKVDPA VLQEMQLEPA EWDPAIIGAI RKLYLKLREE  120
DEEVAERSTC SGRQTNDNGG EVMKIGEERS RSQHYPVRPE AGEGKRGRKN RKNRKNRKNN  180
QNYFSSGGQH PNLYASPNPG NDDVLSPNPG KVNTVLQVYP AELDPAIIDA ISKLSLKEKE  240
EGEQEVEVVK KVDDERSRRH HYPVRPPGAG DSSHNIKTGT HQFGSNCKFN RTRRSKNNQV  300
SKEKMKEREG LAEKPGQTEC KNYFGSGGQR QNRYAPPNPG NDGVLPPNPG KDDVLPANHG  360
DTDCDLATLR EILRHKTALL GIIRKLDAGL FSDIQKIDPA VLREMQANPA EWDPAIIDPI  420
CKLSLEEKDE SEEEVEVSCG GPETEIRNEN RYKTQSEERD GGGGENKNEN GGEVQKKVDE  480
ERSRRHHYPV RPPGPGDSSH NLKTGTHQFG SNCKFNLTRR SKNNQVSKNK MKEREGLAEK  540
PGKTECKVSK DKMKEREGLA EKPGKTECKV SKNKMKEREG LAEKPGKTEF KNYFRSGGRE  600
SGNACALNPR RGEASVAPIL ENFMGLPIRP GEKDCPCYMR TLSCMHGTKC RFNHPDPTPA  660
GESDPPSGNG NGGPASLQGA SSETAAQWYA PISLNNASLY EPIMIPPSQE FPSQNTEWNG  720
YQAPERSMPA PPPSYVMNHS VTETNTYGQY PQQKQVQEFP ERPGQPVCLY FSRAGDCKHK  780
SNCKYHHPKN KTAVPPSCAL SDKGLPLRPG QKICARYSAY GICNSGLACK FNHPSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	174	RKNRKNR
2	171	177	RKNRKNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-75	C3H family protein