PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g083440.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1215aa MW: 131228 Da PI: 7.8055

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g083440.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.9	2.7e-11	190	212	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tGtCk+G++CkF+H++ Pd.00g083440.m01 190 DCSFYLKTGTCKFGSSCKFNHPR 212 5********************96 PP
2	zf-CCCH	24.6	4.3e-08	282	306	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++r+ C +G +C+F+H+ Pd.00g083440.m01 282 GEKDCSFYMRNASCMFGTNCRFNHP 306 7889********************9 PP
3	zf-CCCH	24.6	4.3e-08	654	678	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++r+ C +G +C+F+H+ Pd.00g083440.m01 654 GEKDCSFYMRNASCMFGTNCRFNHP 678 7889********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1215 aa Download sequence
MLPAARLLLP VSVSVLYVLY KYLRSGRATE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE 60 EIRKFDPAVL DEFRKFDPAL LDEFRKFDPA ALDEFRKFDP AALDVIRKLD PAIIDQIHKL 120 CVKEKVEGKE EAERNCSGRE NEIGNETQSE ESGGGGGENK NENGGEVEKK VVNEERSRRH 180 HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PRRRKTNKVS KVKMKEREGL AAEKPGLTES 240 KDYSRSGGCK YEKACSFNPR REEPSVAPIL ECNFLGLPIR PGEKDCSFYM RNASCMFGTN 300 CRFNHPDPTA ARESDPPSGY GNGGSASLQG ALSSTAAPWS APRSLNDAPL YVPMVIPPSQ 360 GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPV 420 CSYFLRTVLY RFYKYLRDEV TRVPQNPPEL SDLDLAILEE IRKLGPALLD KILKDPTLLD 480 EFRKIDPAVL HEFRKLDPAI IGKILQFCLK DNKEGEEEED RSTCSGRETA KQNENGNEET 540 DGGGGENKNE NGGEVEKKVV DEERVRSQHY PVRPGAGEGK TARKNRKNNQ VSKDKMQERE 600 GLAAEKPGQT ECKDYSRSGG RKYEKACSLN PGRGEPSVAP ILECNFLGLP IRPGEKDCSF 660 YMRNASCMFG TNCRFNHPDP TAARESEPPS GYGNGGSASL QGASSSTAAP WSAPRSLNDA 720 PLYVPMVIPH VQIGSWGNAD GVWAQSEAGN KDEASGWTKP AFINENQNDS WKKPSGVDDN 780 KRASWGKADG GSTWTKQDGD ATWNKQGEGS TWNKQDGSSA WNKPAGDSSW SKQAGGSSWG 840 KQADVTAGHE SGGVGNQDIG WKRASSFGGS QSIDGVNGDQ PEDFNNNRSG GNWRGGSGRG 900 NSDRGGFRGG RGFVGRGGDR EEDRGGFGRR WGFGGRGGDR GSFGGRGRSD KGGFGGRGYG 960 GRGRGRYQSG GWSNRNESID NNSSGWSKGA DGAGEGWKKD NGGGSWNQGG GSKNDWQGRN 1020 SSGWSSLSSG WNQYDVTKGI GGSGSGWNQT VEAKYTAGTQ DKGTGSHNEV GRSWGNNWKS 1080 SDASNGDQSS RWKQSTAAEE VKGNTDQDGR WNKGPSSNAQ AGGWGNQGSG WNKGTGSGFG 1140 GGTGEHPSAA VGGQSSDWKQ SSAAGGAQSS SWNQSGEAKQ GTDEGAKPTI SWGKAAAASS 1200 WGKGSDGGSS KVAKK

Sequence ? help Back to Top

Protein Sequence Length: 1215 aa Download sequence

MLPAARLLLP VSVSVLYVLY KYLRSGRATE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE  60
EIRKFDPAVL DEFRKFDPAL LDEFRKFDPA ALDEFRKFDP AALDVIRKLD PAIIDQIHKL  120
CVKEKVEGKE EAERNCSGRE NEIGNETQSE ESGGGGGENK NENGGEVEKK VVNEERSRRH  180
HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PRRRKTNKVS KVKMKEREGL AAEKPGLTES  240
KDYSRSGGCK YEKACSFNPR REEPSVAPIL ECNFLGLPIR PGEKDCSFYM RNASCMFGTN  300
CRFNHPDPTA ARESDPPSGY GNGGSASLQG ALSSTAAPWS APRSLNDAPL YVPMVIPPSQ  360
GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPV  420
CSYFLRTVLY RFYKYLRDEV TRVPQNPPEL SDLDLAILEE IRKLGPALLD KILKDPTLLD  480
EFRKIDPAVL HEFRKLDPAI IGKILQFCLK DNKEGEEEED RSTCSGRETA KQNENGNEET  540
DGGGGENKNE NGGEVEKKVV DEERVRSQHY PVRPGAGEGK TARKNRKNNQ VSKDKMQERE  600
GLAAEKPGQT ECKDYSRSGG RKYEKACSLN PGRGEPSVAP ILECNFLGLP IRPGEKDCSF  660
YMRNASCMFG TNCRFNHPDP TAARESEPPS GYGNGGSASL QGASSSTAAP WSAPRSLNDA  720
PLYVPMVIPH VQIGSWGNAD GVWAQSEAGN KDEASGWTKP AFINENQNDS WKKPSGVDDN  780
KRASWGKADG GSTWTKQDGD ATWNKQGEGS TWNKQDGSSA WNKPAGDSSW SKQAGGSSWG  840
KQADVTAGHE SGGVGNQDIG WKRASSFGGS QSIDGVNGDQ PEDFNNNRSG GNWRGGSGRG  900
NSDRGGFRGG RGFVGRGGDR EEDRGGFGRR WGFGGRGGDR GSFGGRGRSD KGGFGGRGYG  960
GRGRGRYQSG GWSNRNESID NNSSGWSKGA DGAGEGWKKD NGGGSWNQGG GSKNDWQGRN  1020
SSGWSSLSSG WNQYDVTKGI GGSGSGWNQT VEAKYTAGTQ DKGTGSHNEV GRSWGNNWKS  1080
SDASNGDQSS RWKQSTAAEE VKGNTDQDGR WNKGPSSNAQ AGGWGNQGSG WNKGTGSGFG  1140
GGTGEHPSAA VGGQSSDWKQ SSAAGGAQSS SWNQSGEAKQ GTDEGAKPTI SWGKAAAASS  1200
WGKGSDGGSS KVAKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	215	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-67	C3H family protein