PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g083450.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 416aa MW: 45772.8 Da PI: 7.4492

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g083450.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.4e-13	77	99	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tG Ck+G++CkF+H+ Pd.00g083450.m01 77 EDCSYYLKTGSCKFGSNCKFNHP 99 89********************9 PP
2	zf-CCCH	29.7	1.1e-09	121	145	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++r+G CkyG C+++H++ Pd.00g083450.m01 121 QTECKYYLRSGGCKYGKACRYSHSK 145 679********************95 PP
3	zf-CCCH	35	2.4e-11	165	190	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r+G Cky ++C+F+H+ Pd.00g083450.m01 165 PGERECPYYMRNGSCKYASNCRFNHP 190 5789*********************9 PP
4	zf-CCCH	22.2	2.6e-07	306	327	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f+rtG Ck+ ++Ck++H++ Pd.00g083450.m01 306 CSYFLRTGDCKFKSNCKYHHPK 327 ********************96 PP
5	zf-CCCH	33.1	9.8e-11	349	372	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ CkF H+ Pd.00g083450.m01 349 QNICTHYSRYGICKFGPVCKFDHP 372 679********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MEVSEAISVP PNLDANNHHI DEHHQPSHSE IGFLPSSPDP DPAPDGGENQ SEDGGDAEKK 60 AEESRRRYQY PVRPEAEDCS YYLKTGSCKF GSNCKFNHPV KRKGSKDKVK EREEFGDKTG 120 QTECKYYLRS GGCKYGKACR YSHSKGKPSV APVVELNFLG LPIRPGEREC PYYMRNGSCK 180 YASNCRFNHP DPTAAGGSDP ASAFGNGGPA SLQGVPQSTV APWSAPRSLD ETPLYVPMMI 240 PPSQGVPSQN TEWNGYQAPA YLPERSMPAR QPYLMNNSMT ETNIYKQYPQ HQQAEEFPER 300 PGQPFCSYFL RTGDCKFKSN CKYHHPKTQT AVSPQCALSD KGLPLRPDQN ICTHYSRYGI 360 CKFGPVCKFD HPLNITSSTT SGPDHQLPFS DSATTNGAGT AGSRSGTDAI SQLQPV

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MEVSEAISVP PNLDANNHHI DEHHQPSHSE IGFLPSSPDP DPAPDGGENQ SEDGGDAEKK  60
AEESRRRYQY PVRPEAEDCS YYLKTGSCKF GSNCKFNHPV KRKGSKDKVK EREEFGDKTG  120
QTECKYYLRS GGCKYGKACR YSHSKGKPSV APVVELNFLG LPIRPGEREC PYYMRNGSCK  180
YASNCRFNHP DPTAAGGSDP ASAFGNGGPA SLQGVPQSTV APWSAPRSLD ETPLYVPMMI  240
PPSQGVPSQN TEWNGYQAPA YLPERSMPAR QPYLMNNSMT ETNIYKQYPQ HQQAEEFPER  300
PGQPFCSYFL RTGDCKFKSN CKYHHPKTQT AVSPQCALSD KGLPLRPDQN ICTHYSRYGI  360
CKFGPVCKFD HPLNITSSTT SGPDHQLPFS DSATTNGAGT AGSRSGTDAI SQLQPV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-132	C3H family protein