PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g090730.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 342aa MW: 37856.8 Da PI: 7.4742

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g090730.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.4	3.3e-10	92	116	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ Pd.00g090730.m01 92 FKTKLCCKFRA-GTCPYVTNCNFAHS 116 69*******.***********8 PP
2	zf-CCCH	18.7	3.2e-06	165	190	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ Pd.00g090730.m01 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190 78888********************7 PP
3	zf-CCCH	43.6	5e-14	222	247	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Pd.00g090730.m01 222 WKTRICNKWELTGYCPFGSKCHFAHG 247 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MDYGRETNVV QVITGNSVGG DIWSADQAVW ATEDEYRVWN NGDALADTMS NSNYDQRQSQ 60 SRSGSEPPNK KSRNSQDATS SNRSKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHSIEEL 120 RRPPPNWQEI VAAHEEEKGV SSEPREEYQI PIVSTGYGVE TQRSYKGRHC KKFYTEEGCP 180 YGDNCTFLHD EQSKNRESVA ISLGPGGYGG AANGANNKPS NWKTRICNKW ELTGYCPFGS 240 KCHFAHGVAE LHRYGGGLVE GDARESSSAP PDNKQGGVPS KTPADTVVVS VPLVPHSDVY 300 HLGVPSQRSS IVNQRPGQRA HQKWKGPDKI SRIYGDWIDE IE

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MDYGRETNVV QVITGNSVGG DIWSADQAVW ATEDEYRVWN NGDALADTMS NSNYDQRQSQ  60
SRSGSEPPNK KSRNSQDATS SNRSKAIGKM FFKTKLCCKF RAGTCPYVTN CNFAHSIEEL  120
RRPPPNWQEI VAAHEEEKGV SSEPREEYQI PIVSTGYGVE TQRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG AANGANNKPS NWKTRICNKW ELTGYCPFGS  240
KCHFAHGVAE LHRYGGGLVE GDARESSSAP PDNKQGGVPS KTPADTVVVS VPLVPHSDVY  300
HLGVPSQRSS IVNQRPGQRA HQKWKGPDKI SRIYGDWIDE IE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-128	C3H family protein