PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g098620.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 341aa MW: 39287.7 Da PI: 9.8112

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g098620.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.5e-06	64	88	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ dC sF+rk++L+rH+ H Pd.00g098620.m01 64 YICSvdDCRSSFRRKDHLNRHLLQH 88 89*******************9887 PP
2	zf-C2H2	14.9	7.9e-05	93	118	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC +C++ F ++ n++rH r H Pd.00g098620.m01 93 FKCLieNCNRGFVSQGNMRRHVRElH 118 799999*****************988 PP
3	zf-C2H2	23.6	1.3e-07	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+dCgk+F+ s L++H ++H Pd.00g098620.m01 133 HVCQDCGKVFKFASKLQKHENSH 155 79******************999 PP
4	zf-C2H2	13.5	0.00022	223	247	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++H + H Pd.00g098620.m01 223 KCSykGCLHTFSTKSNLHQHVKAvH 247 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MREVSDLTGP VSGGRPPVKL HQVNLNHVLL GLRNRHFKEV SVGQLPGGRP PGKLHQASLN 60 HRPYICSVDD CRSSFRRKDH LNRHLLQHQG KLFKCLIENC NRGFVSQGNM RRHVRELHNE 120 DDPSANVGGQ KQHVCQDCGK VFKFASKLQK HENSHVKLDS VEAFCSEPGC MKYFSNQKCL 180 KAHIQSCHQH ITCEICGTKK LKRNIERHLY THEGGRASVE RIKCSYKGCL HTFSTKSNLH 240 QHVKAVHLEH KPFVCSFSGC GMRFAYKHVR DKHEKTGRHV YAYGDFEEAD EQFRSRPRGG 300 RKRKYPTIEM LVRKRVTPPD QLGQESEYRS WLLSQEAEDE N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	304	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	1e-111	C2H2 family protein