PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1000230.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 266aa    MW: 30707.8 Da    PI: 7.7529
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1000230.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161157248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +WT eEd+ll ++++ +G g W+ ++++ g++R++k+c++rw++yl
  Pd.00g1000230.m01 11 RAWTREEDDLLRQCIENHGEGKWHQVPNKAGLNRCRKSCRLRWLNYL 57
                       68*******************************************97 PP
2Myb_DNA-binding50.35.6e-1663106146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg +T++E +l+++++k+lG++ W++Ia +++ gRt++++k++w++
  Pd.00g1000230.m01  63 RGDFTEDEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNT 106
                        899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MEGSNLGVRK RAWTREEDDL LRQCIENHGE GKWHQVPNKA GLNRCRKSCR LRWLNYLKPN  60
IKRGDFTEDE VDLIIRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTRLRM DCRLKKVKDK  120
PQETIKAIVI RPQPRSFIKS SNCLSSKEPI LDHIQTVENF STPSQSSPST KNRNDWWETF  180
LDDEDVFEKA TCYGLALEEE EFTRFWVDDM PQSKRQCTNV TEEGLGTGEE KLMDLNTAVA  240
IPEEKDLLQQ LQGSAPTPTP INVIGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-61MYB family protein