PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1000710.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 259aa    MW: 28845.8 Da    PI: 9.9207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1000710.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27.1e-173481148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W+++Ed++l+d++k +G g+W++ ++  g++R++k+c++rw +yl
  Pd.00g1000710.m01 34 KGAWSKQEDQKLIDYIKAHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 81
                       79********************************************97 PP
2Myb_DNA-binding52.11.5e-1687131147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Pd.00g1000710.m01  87 RGNFEQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 131
                        899*******************.*********.***********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MRELRAPTAI LATVEGGGGL NWGKLGNLDR GTNKGAWSKQ EDQKLIDYIK AHGEGCWRSL  60
PKAAGLHRCG KSCRLRWINY LRPDIKRGNF EQDEEDLIIK LHALLGNRWS LIAGRLPGRT  120
DNEVKNYWNS HIRKKLIKMG IDPNNHRLNQ IIPRPNPQND CVSAAATSSG SMSNISACTK  180
APIKSSREID QRASQATSVL EDETSGSSSR DLNLDLTIAF PNPPLQVGEE MQKNIKGSFI  240
MAREIETNLQ HSPTLALFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.13e-72MYB family protein