PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1003710.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 488aa MW: 54081.9 Da PI: 10.1381

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1003710.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.5	3.6e-28	67	151	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r+++ k+plW+evs+k+++ g+ rs+k+Ckek+en+ k+++++keg+ ++++++ t+++fdqlea Pd.00g1003710.m01 67 RWPRQETLALLQIRSDMDVAFRDASVKGPLWDEVSRKLAALGYLRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLEA 151 8******************************************************************975544..6*****85 PP
2	trihelix	105.3	4.5e-33	374	458	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r++++++++++ k+plWee+s +mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+ Pd.00g1003710.m01 374 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGAMRKLGYNRSSKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLD 458 8******************************************************************97.99********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MLGDSSVLGS AISRDATATA AVAVPEVGGG HGGGGGGGSN SGEDTFRGAG GGDDLLGSGE 60 RSFGGNRWPR QETLALLQIR SDMDVAFRDA SVKGPLWDEV SRKLAALGYL RSAKKCKEKF 120 ENVYKYHRRT KEGRTGKSEG KTYRFFDQLE ALENQPQTPG TTHHHQAKPH HQSTMAAVAA 180 TMASTIPSSA APHPIISNVS SQAIAAPTLN LAAPNSFPPT NPIRLMKEVI QKQEDLQKRF 240 LEAIEKREHE KMVREEAWRM QEMARVNRER ELLAQERSIA AAKDAAVMSF LQKISEQQQN 300 PNQTLPPGQS QINNNLLQLQ PTQLVPPPPR QPAPLPQPQP QPQSQQPVTN FELVPKPNNN 360 GENNNLSSPA SSSRWPKVEV QALIKLRTSL DSKYQENGPK GPLWEEISGA MRKLGYNRSS 420 KRCKEKWENI NKYFKKVKES NKRRPEDSKT CPYFHQLDSL YRERNKFDHN NVNPKPENSV 480 PLMGIGGV

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MLGDSSVLGS AISRDATATA AVAVPEVGGG HGGGGGGGSN SGEDTFRGAG GGDDLLGSGE  60
RSFGGNRWPR QETLALLQIR SDMDVAFRDA SVKGPLWDEV SRKLAALGYL RSAKKCKEKF  120
ENVYKYHRRT KEGRTGKSEG KTYRFFDQLE ALENQPQTPG TTHHHQAKPH HQSTMAAVAA  180
TMASTIPSSA APHPIISNVS SQAIAAPTLN LAAPNSFPPT NPIRLMKEVI QKQEDLQKRF  240
LEAIEKREHE KMVREEAWRM QEMARVNRER ELLAQERSIA AAKDAAVMSF LQKISEQQQN  300
PNQTLPPGQS QINNNLLQLQ PTQLVPPPPR QPAPLPQPQP QPQSQQPVTN FELVPKPNNN  360
GENNNLSSPA SSSRWPKVEV QALIKLRTSL DSKYQENGPK GPLWEEISGA MRKLGYNRSS  420
KRCKEKWENI NKYFKKVKES NKRRPEDSKT CPYFHQLDSL YRERNKFDHN NVNPKPENSV  480
PLMGIGGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-89	Trihelix family protein