PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1006880.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 265aa    MW: 29947.8 Da    PI: 6.7082
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1006880.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-152370148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  Pd.00g1006880.m01 23 KGLWSPEEDEKLMRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYL 70
                       678*******************************************97 PP
2Myb_DNA-binding51.13e-1676119146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+el+v+ +  lG++ W+ Ia++++ gRt++++k++w++
  Pd.00g1006880.m01  76 RGAFSPQEEELIVHFHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 119
                        89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MGKEEGANNI NKKKKMIMSK LRKGLWSPEE DEKLMRYMLT NGQGCWSDIA RNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS PQEEELIVHF HSILGNRWSQ IAARLPGRTD NEIKNFWNSA  120
LKKSNTLFDP FSMLDHRYDM AHADATLNVN PTCLANLPNI GDQGYYGDCG NLGAGHKMGL  180
EGDLCVPALE SRSVESNMNG QVAENISKTI NNHFHNNCFN NTTEMIGFKV DEDMLGFGNN  240
GHGENLRMGE WDFEGFMQDI SSFLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-67MYB family protein