PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1010060.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 388aa MW: 42706.6 Da PI: 5.6621

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1010060.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.2e-17	42	87	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Pd.00g1010060.m01 42 KGPWSPEEDAILSRLVSKFGARNWSLIARGID-GRSGKSCRLRWCNQ 87 79****************************.*********985 PP
2	Myb_DNA-binding	56.1	8.4e-18	94	138	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd+ ++ a++ +G++ W++Iar ++ gRt++ +k++w++ Pd.00g1010060.m01 94 RKPFTDEEDQMIIAAHAFHGNK-WAAIARLLP-GRTDNAIKNHWNST 138 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MKFCGGCKIE VEDGGDSGEE ATQAVAGGGG ESHRKSGRDR VKGPWSPEED AILSRLVSKF 60 GARNWSLIAR GIDGRSGKSC RLRWCNQLDP SVKRKPFTDE EDQMIIAAHA FHGNKWAAIA 120 RLLPGRTDNA IKNHWNSTLR RRCMDPDKIK LESGNTVEDV SLDKTKASSE ETFSYGDVNS 180 SKSMEGREVS SLEHMDCQYE DKESTEGQFS HEVKEQPTLC RPAACISAFS VYNHSDSQET 240 GVSFPRLIPV QGPLVQVSKL DVNISKLLDG VYGERSIPDQ CGHGCCCANG KNAQNSLLGP 300 EFVDFSEPPS FSSFELAAIA TDISNLAWIK SGLENSSVRA MGDAADRTVP HESQGQMGHF 360 EESRMNNLFR FEERNDRLMG MKTNVLST

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MKFCGGCKIE VEDGGDSGEE ATQAVAGGGG ESHRKSGRDR VKGPWSPEED AILSRLVSKF  60
GARNWSLIAR GIDGRSGKSC RLRWCNQLDP SVKRKPFTDE EDQMIIAAHA FHGNKWAAIA  120
RLLPGRTDNA IKNHWNSTLR RRCMDPDKIK LESGNTVEDV SLDKTKASSE ETFSYGDVNS  180
SKSMEGREVS SLEHMDCQYE DKESTEGQFS HEVKEQPTLC RPAACISAFS VYNHSDSQET  240
GVSFPRLIPV QGPLVQVSKL DVNISKLLDG VYGERSIPDQ CGHGCCCANG KNAQNSLLGP  300
EFVDFSEPPS FSSFELAAIA TDISNLAWIK SGLENSSVRA MGDAADRTVP HESQGQMGHF  360
EESRMNNLFR FEERNDRLMG MKTNVLST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	5e-98	MYB family protein