PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1013950.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 150aa    MW: 16878 Da    PI: 7.4035
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1013950.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-115879627
                       -SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                       C++f +tG+C+yGd+C++ H++
  Pd.00g1013950.m01 58 CNRFVKTGFCPYGDSCRYLHPK 79
                       ********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MPLGKYYCEY CDKEFQDTPS ARRRHLQGLQ HLRAKAQWYD SFKDPSHAYT ESLTKGVCNR  60
FVKTGFCPYG DSCRYLHPKN NQQNMVTQGA PGLIDNNQSS TFQENQLVGG SSLPDVVVRD  120
SMGMSWGNLP PSLMPPPEGG YPPLPFVDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.17e-28C3H family protein