PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1019830.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 373aa MW: 40883.8 Da PI: 8.7904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1019830.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.8e-06	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g1019830.m01 80 FVCEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	12	0.00062	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g1019830.m01 157 WKCDKCSKIYAVQSDWKAHSKTC 179 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD HQHPHPTNKI KKKRSLPGNP 60 DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKDQIKKR 120 AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG 180 TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESAKLTHPSS KPSTSSAHLS ATALLQKAAT 240 VGSASSAAAS AGQQDQSAGL TVGEFGTASH MNMISTDYLG EFTSGDLATW QKTDRLTRDF 300 LGLTGDGTGN HNVGAVNVVK DMLTYAGGVE FHQQQQQPYD QPLRGHNNSL LLKPQGFGFA 360 ETTAAASETW GDC

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MFPAMSNSTS LSEEANSLSS DFGPLNPLLL STNISPHQSD HQHPHPTNKI KKKRSLPGNP  60
DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RNNKDQIKKR  120
AYVCPEPSCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKIYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRKDSFIT HRAFCDALAE ESAKLTHPSS KPSTSSAHLS ATALLQKAAT  240
VGSASSAAAS AGQQDQSAGL TVGEFGTASH MNMISTDYLG EFTSGDLATW QKTDRLTRDF  300
LGLTGDGTGN HNVGAVNVVK DMLTYAGGVE FHQQQQQPYD QPLRGHNNSL LLKPQGFGFA  360
ETTAAASETW GDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-114	C2H2 family protein