PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1026960.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 505aa MW: 58509.1 Da PI: 10.8065

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1026960.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	61.4	2.4e-19	5	52	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +CaaCk+lrr+C++dC++ pyfp ++p++fa vh+++Gasnv k+l+ Pd.00g1026960.m01 5 RCAACKYLRRRCPSDCIFFPYFPPNNPERFASVHRIYGASNVAKMLQG 52 6********************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR 60 CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ 120 NELERLFGRY GKVDRVDMKS GFAFIYMEDE RDAEYAIRGL DRKEFGRKGR RLRVEWTKHE 180 RGTRRPGASR RSSTNTRPSK TLFVINFDPY HTRTKDLERH FDPYGKIVSV RIRRNFAFVQ 240 YESQEDATRA LEATNMSKLM DRVISVEYAV RDDDERRDGF SPDRRSRDRS LDRGRDRRRS 300 PSPYKRERGS PDYGRGPSPG PYRRERGSPD YGRGPSPYRR ERVSPDYGRG RSPSPYRRER 360 SDHGRISSRS PRKERVSADR IRDRSRSPYG RERPGADNGH APIRSPYKRD RDSPENGAIE 420 SPYKRDRGSP ENGAIQSPYK RDKSSPENGR GPSSSPYERE RVSPEHGRGP SPNSVPEARG 480 DSPNYGGPES PMQERYSSRS PQAEE

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MISGRCAACK YLRRRCPSDC IFFPYFPPNN PERFASVHRI YGASNVAKML QGPFQQYPKR  60
CFLVLFITLT RASVRSNQRN ITHFPQIARV RGSVAFISSS VKEKKMRPIF CGNFEYDARQ  120
NELERLFGRY GKVDRVDMKS GFAFIYMEDE RDAEYAIRGL DRKEFGRKGR RLRVEWTKHE  180
RGTRRPGASR RSSTNTRPSK TLFVINFDPY HTRTKDLERH FDPYGKIVSV RIRRNFAFVQ  240
YESQEDATRA LEATNMSKLM DRVISVEYAV RDDDERRDGF SPDRRSRDRS LDRGRDRRRS  300
PSPYKRERGS PDYGRGPSPG PYRRERGSPD YGRGPSPYRR ERVSPDYGRG RSPSPYRRER  360
SDHGRISSRS PRKERVSADR IRDRSRSPYG RERPGADNGH APIRSPYKRD RDSPENGAIE  420
SPYKRDRGSP ENGAIQSPYK RDKSSPENGR GPSSSPYERE RVSPEHGRGP SPNSVPEARG  480
DSPNYGGPES PMQERYSSRS PQAEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	4e-24	LBD family protein