PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1027710.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 700aa MW: 77322.8 Da PI: 7.9243

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1027710.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	76	97	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Pd.00g1027710.m01 76 KCDKCPREFCSSINYRRHIRVH 97 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MPIAKLKASN TLDAMKSEEG NDSLDTIIRQ VAKEPSISFS RAGDSPVPWI QLLHALDQQE 60 LPGWPLHSPI KVQLQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGAFWDK 120 LSPEEAKEAA SFKNVTLEEV PGSSIIKALT THIRKPGFSS MPHIYLKAGS ALLDIVQARP 180 SRFPISSQEL FSILDDASEK TFLSGTAISM QRYIFDGEAG KVGLESKNLV ACTSFLVEQK 240 LVKAWHADKD AEALRLQKLL VEEEEAAQRR QAELMERKRQ KKLRQKEQKA KDQRHGVKVD 300 VKENIDETLE AEPLVETSSP SATFDSDTTS SDVQAHDSLS LEAFQLSTAD ENVDPESQTE 360 FIHGHTDLVS GPNVERRMVQ GSGCRRAVVA RWQVLSKSQR GVPHGFHGGQ SSQTSKLSSI 420 QNHGNHRDSR AASSGNKVWS RKPKPEYDGG SLKAGVQKEA TEPDQIKNQE VLIGSISVNL 480 GNCSQESDNL AGVDDDCLLE HQIPKNNAYD KTNKPALVHS GTNRSTVKLW RPVSRHGTKV 540 PMAIQNGNRA SEIDVVAEKG NCQSPSSENC PRSCVMDGSN DGNGNGSTCL DETGSLRFSS 600 RAAKDFLAQR WKEAIAADHV ELVLLQDSEP PRCPDNQNDG EVESSHSLKF KRSILGNAEN 660 RLVNVEGLEF PTAGAAKVKH RTKPEKGLKI KYIPKQSTVT

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MPIAKLKASN TLDAMKSEEG NDSLDTIIRQ VAKEPSISFS RAGDSPVPWI QLLHALDQQE  60
LPGWPLHSPI KVQLQKCDKC PREFCSSINY RRHIRVHHRL KKLDKDSSKN RELLGAFWDK  120
LSPEEAKEAA SFKNVTLEEV PGSSIIKALT THIRKPGFSS MPHIYLKAGS ALLDIVQARP  180
SRFPISSQEL FSILDDASEK TFLSGTAISM QRYIFDGEAG KVGLESKNLV ACTSFLVEQK  240
LVKAWHADKD AEALRLQKLL VEEEEAAQRR QAELMERKRQ KKLRQKEQKA KDQRHGVKVD  300
VKENIDETLE AEPLVETSSP SATFDSDTTS SDVQAHDSLS LEAFQLSTAD ENVDPESQTE  360
FIHGHTDLVS GPNVERRMVQ GSGCRRAVVA RWQVLSKSQR GVPHGFHGGQ SSQTSKLSSI  420
QNHGNHRDSR AASSGNKVWS RKPKPEYDGG SLKAGVQKEA TEPDQIKNQE VLIGSISVNL  480
GNCSQESDNL AGVDDDCLLE HQIPKNNAYD KTNKPALVHS GTNRSTVKLW RPVSRHGTKV  540
PMAIQNGNRA SEIDVVAEKG NCQSPSSENC PRSCVMDGSN DGNGNGSTCL DETGSLRFSS  600
RAAKDFLAQR WKEAIAADHV ELVLLQDSEP PRCPDNQNDG EVESSHSLKF KRSILGNAEN  660
RLVNVEGLEF PTAGAAKVKH RTKPEKGLKI KYIPKQSTVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	283	ERKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-140	C2H2 family protein