PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1027960.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 368aa    MW: 40704.4 Da    PI: 6.0089
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1027960.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.41.2e-10313686374
               GRAS   6 lecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                        +e+A+a+s+g+ e+a ++L+rl +    +p+ ++ qRl  ++t AL++r++     + +  p++e     s+e++ +++l++e++P+++f++
  Pd.00g1027960.m01   1 MEAATAISEGKSEAAAEILTRLTTSqvPNPRPNSEQRLLEVMTSALKSRVNP----VDNPPPVTE---LFSQEHAGSTQLLYELFPCFRFGF 85 
                        689******************988744677779******************9....443333333...3499******************** PP

               GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                        ++aN aIlea+ ++    ++vH+iDfdi+qG+Q++ LlqaL +R +g p +++iT+v++  +g +++l  ++++L+k+A++ gv +efn+ v
  Pd.00g1027960.m01  86 MAANLAILEATLTDksatNKVHVIDFDIGQGGQYVLLLQALYERLNGLPaTVKITTVAD--NGGEDRLTMVRQNLSKVAKQRGVVLEFNI-V 174
                        **********9777678899*************************88776*********..77**************************9.8 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        +++l++l+ e+L ++p+E +aVn++++l++++desvs++++rde+L+ vk+lsP+vv++veqe+++n+++F++r+ e++ yy al++s++++
  Pd.00g1027960.m01 175 SQKLAELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLSPRVVTLVEQELNTNTAPFMARVKETCGYYGALLESMKST 266
                        *****************************************************************************************988 PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWk 363
                         + +++er+k E++ l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++++  k  l+  +   + g++v+ee+g +++gW 
  Pd.00g1027960.m01 267 EAGDNSERVKAEEA-LSRKLINSVACEGRDRVERCEVFGKWRARMGMAGFELRPMSQNMTEVLKQRLSSGNnrvNSGFTVKEENGGVCFGWI 357
                        8999**********.*******************************************9999988886544235789*************** PP

               GRAS 364 drpLvsvSaWr 374
                        +r+L+++SaWr
  Pd.00g1027960.m01 358 SRTLTVASAWR 368
                        **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MEAATAISEG KSEAAAEILT RLTTSQVPNP RPNSEQRLLE VMTSALKSRV NPVDNPPPVT  60
ELFSQEHAGS TQLLYELFPC FRFGFMAANL AILEATLTDK SATNKVHVID FDIGQGGQYV  120
LLLQALYERL NGLPATVKIT TVADNGGEDR LTMVRQNLSK VAKQRGVVLE FNIVSQKLAE  180
LNRESLGCEP DEPIAVNFAF KLYSMPDESV STDNPRDELL RRVKGLSPRV VTLVEQELNT  240
NTAPFMARVK ETCGYYGALL ESMKSTEAGD NSERVKAEEA LSRKLINSVA CEGRDRVERC  300
EVFGKWRARM GMAGFELRPM SQNMTEVLKQ RLSSGNNRVN SGFTVKEENG GVCFGWISRT  360
LTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-154GRAS family protein