PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1027960.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 327aa    MW: 36312.4 Da    PI: 7.2171
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1027960.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.73.4e-95132745374
               GRAS  45 fteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaL 132
                        +t AL++r++     + +   p + +e  s+e++ +++l++e++P+++f++++aN aIlea+ ++    ++vH+iDfdi+qG+Q++ LlqaL
  Pd.00g1027960.m02   1 MTSALKSRVNP----VDN---PPPVTELFSQEHAGSTQLLYELFPCFRFGFMAANLAILEATLTDksatNKVHVIDFDIGQGGQYVLLLQAL 85 
                        57788888887....333...33333334999*****************************9777678899********************* PP

               GRAS 133 asRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223
                         +R +g p +++iT+v++  +g +++l  ++++L+k+A++ gv +efn+ v+++l++l+ e+L ++p+E +aVn++++l++++desvs++++
  Pd.00g1027960.m02  86 YERLNGLPaTVKITTVAD--NGGEDRLTMVRQNLSKVAKQRGVVLEFNI-VSQKLAELNRESLGCEPDEPIAVNFAFKLYSMPDESVSTDNP 174
                        ****88776*********..77**************************9.8***************************************** PP

               GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315
                        rde+L+ vk+lsP+vv++veqe+++n+++F++r+ e++ yy al++s++++ + +++er+k E++ l+r++ n vaceg++r+er+e ++kW
  Pd.00g1027960.m02 175 RDELLRRVKGLSPRVVTLVEQELNTNTAPFMARVKETCGYYGALLESMKSTEAGDNSERVKAEEA-LSRKLINSVACEGRDRVERCEVFGKW 265
                        ************************************************9888999**********.************************** PP

               GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk...sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        r+r+++aGF+  p+s+++++  k  l+  +   + g++v+ee+g +++gW +r+L+++SaWr
  Pd.00g1027960.m02 266 RARMGMAGFELRPMSQNMTEVLKQRLSSGNnrvNSGFTVKEENGGVCFGWISRTLTVASAWR 327
                        *****************9999988886544235789*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MTSALKSRVN PVDNPPPVTE LFSQEHAGST QLLYELFPCF RFGFMAANLA ILEATLTDKS  60
ATNKVHVIDF DIGQGGQYVL LLQALYERLN GLPATVKITT VADNGGEDRL TMVRQNLSKV  120
AKQRGVVLEF NIVSQKLAEL NRESLGCEPD EPIAVNFAFK LYSMPDESVS TDNPRDELLR  180
RVKGLSPRVV TLVEQELNTN TAPFMARVKE TCGYYGALLE SMKSTEAGDN SERVKAEEAL  240
SRKLINSVAC EGRDRVERCE VFGKWRARMG MAGFELRPMS QNMTEVLKQR LSSGNNRVNS  300
GFTVKEENGG VCFGWISRTL TVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-139GRAS family protein