PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1030420.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 422aa MW: 46379.9 Da PI: 8.4437

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1030420.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g1030420.m01 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP
2	zf-C2H2	12.4	0.00048	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g1030420.m01 145 WKCDKCSKKYAVQSDWKAHSKTC 167 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MMSGDGFSII PSAIDGFAQE HQLNANPSSQ KPNPNNPVAK KKRNLPGTPD PDAEVVALSP 60 TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR LNKEVKKKVY ICPEKSCVHH 120 DPSRALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTLF 180 SRKDSFITHR AFCDALTEES ARLTTSVAGA ATNLNFGNET MLNNTMMHNG HAVQDDVSQI 240 SQYGQGLIRQ DFNGLDHHHQ QHEKPSLSLW LNQQQANSNS HQLNLMDNMA ANPNQLYVTS 300 SSSTAFPDMA QMPSANNLNQ LFGSPNAMST FGSSNINLFG SGSASSSTST SAANNLSLSS 360 PIQEGGIHKG NSNLAESSLG SCRRIDHDAE LKEEKENKKL GPGQLCDCIV NCPLDGLGRI 420 TE

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MMSGDGFSII PSAIDGFAQE HQLNANPSSQ KPNPNNPVAK KKRNLPGTPD PDAEVVALSP  60
TTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLKQR LNKEVKKKVY ICPEKSCVHH  120
DPSRALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTLF  180
SRKDSFITHR AFCDALTEES ARLTTSVAGA ATNLNFGNET MLNNTMMHNG HAVQDDVSQI  240
SQYGQGLIRQ DFNGLDHHHQ QHEKPSLSLW LNQQQANSNS HQLNLMDNMA ANPNQLYVTS  300
SSSTAFPDMA QMPSANNLNQ LFGSPNAMST FGSSNINLFG SGSASSSTST SAANNLSLSS  360
PIQEGGIHKG NSNLAESSLG SCRRIDHDAE LKEEKENKKL GPGQLCDCIV NCPLDGLGRI  420
TE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-103	C2H2 family protein