PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1032720.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 223aa    MW: 25082.1 Da    PI: 4.3864
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1032720.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.54e-3771071100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+ +Cv+apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ +l yeA ar+ dPvyG+++ i++lqqq+  l+
  Pd.00g1032720.m01   7 SCGACKFLRRKCTGECVFAPYFCYDQaADHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITLSYEALARMCDPVYGCFSQIFALQQQVVYLQ 98 
                        6************************9789*************************************************************** PP

             DUF260  92 aelallkee 100
                        +e+++l+++
  Pd.00g1032720.m01  99 EEIETLGNQ 107
                        ****99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MTGLGSSCGA CKFLRRKCTG ECVFAPYFCY DQAADHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITLSY EALARMCDPV YGCFSQIFAL QQQVVYLQEE IETLGNQMVN FATGHSSNSF  120
SELQVFSQHD AVETQYLQSQ LPEPLQLPVM ENATANQVFN SQMDIQMPPL HEWEEVDLFG  180
DQSVPDPLER FLEGPQENLG HNPWLNETAN TRNYNKGSSW DLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.17e-57LBD family protein