PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1036160.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 1115aa MW: 126247 Da PI: 8.8506

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1036160.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79	7.9e-25	947	1021	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k++l Pd.00g1036160.m01 947 PARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQL 1021 689*****************************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1115 aa Download sequence
MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK 60 KAKQIKSSGI EVSPTSRATC KSCSQKILKA EVRISTKPEG QGPRGLAWHH ANCFMELSPS 120 TEVEKLSGWE TLPVADQAAV RALVKKVPSN ARGKKTEEQE DKEFLQQSTP KTSTKRRKDS 180 GGDQQSKVAR LEGDVSTSWD VSARDATDLE SKLEAQTKEL WALKDDLKKH VTTAELREML 240 EANVQDSTGS ELDLRERCAD GMMFGALSRC PICSGFLRYS GGMYRCHGYI SEWSKCSYST 300 EEPERLKWKW KIPEDTDNQY LNKWFKSQKV EKPVRILPPS TPNKPSGSQA FNGQSQSSNS 360 ANLADLKVAF RGLPQESMEE WSRKIEGVAG LVHSKIKKDT NCLVVSGALD DKDAEMRKAR 420 RMKLPIVRED YLVDCFKKQK KLPFDLYKVE VVGEASSMVT VKVKGRSAVH ESSGLQDTCH 480 ILEDGKSIYN TTLSMSDLST GVNSYYILQI IQDDKSSDCY VFRKWGRVGN DKIGGNKLEE 540 MSKSDAICEF KRLFLEKTGN SWEAWEQKQH FQKQPGRFFP LDIDYGVNKQ VSKKNQNNAA 600 SKLAPPLAEL MKMLFNVETY RAAMMEFEIN MSEMPLGKLS TSNIQKGFEA LTEIQNLLNS 660 NGHAPSMKES LIVDASNRFF TVIPSIHPRV IRDEDDFKSK VKMLEALQDI EIASRLVGFD 720 ADTDDSLDEK YRKLRCDIDP IPHDSEDFRL IKKYLLTTHA PTHTDWSLEL EEVFALEREG 780 EFDKFAPYRK KLNNRMLLWH GSRFTNFFGK GIYFADLVSK SAQYCYTDKK NPVGLMLLSE 840 VALGEVHELK KATYMDKPPK GKHSTKGLGK KIPQESEYVK WKDDVIVPCG KPVPSNIKAS 900 ELMYNEYIVY DKAQVKMQFL LKVRFHHKRK IPAGMPQGDK LQQFPGPARF AAIHKVFGAS 960 NVSKLLLHVP VHDRCEAVVT IAYEAQARIR DPVYGCVAHI FSLQQQVACL QAQLMQVKAQ 1020 LAHQSLVDSR NIESTQWPGN VNGVTNFPNY PSYMNPISPQ SSLESIDHNC SDIAMNMQEI 1080 QSSRDDFSYQ ACSKRRPYNG DLGELQALAL RMMRN

Sequence ? help Back to Top

Protein Sequence Length: 1115 aa Download sequence

MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK  60
KAKQIKSSGI EVSPTSRATC KSCSQKILKA EVRISTKPEG QGPRGLAWHH ANCFMELSPS  120
TEVEKLSGWE TLPVADQAAV RALVKKVPSN ARGKKTEEQE DKEFLQQSTP KTSTKRRKDS  180
GGDQQSKVAR LEGDVSTSWD VSARDATDLE SKLEAQTKEL WALKDDLKKH VTTAELREML  240
EANVQDSTGS ELDLRERCAD GMMFGALSRC PICSGFLRYS GGMYRCHGYI SEWSKCSYST  300
EEPERLKWKW KIPEDTDNQY LNKWFKSQKV EKPVRILPPS TPNKPSGSQA FNGQSQSSNS  360
ANLADLKVAF RGLPQESMEE WSRKIEGVAG LVHSKIKKDT NCLVVSGALD DKDAEMRKAR  420
RMKLPIVRED YLVDCFKKQK KLPFDLYKVE VVGEASSMVT VKVKGRSAVH ESSGLQDTCH  480
ILEDGKSIYN TTLSMSDLST GVNSYYILQI IQDDKSSDCY VFRKWGRVGN DKIGGNKLEE  540
MSKSDAICEF KRLFLEKTGN SWEAWEQKQH FQKQPGRFFP LDIDYGVNKQ VSKKNQNNAA  600
SKLAPPLAEL MKMLFNVETY RAAMMEFEIN MSEMPLGKLS TSNIQKGFEA LTEIQNLLNS  660
NGHAPSMKES LIVDASNRFF TVIPSIHPRV IRDEDDFKSK VKMLEALQDI EIASRLVGFD  720
ADTDDSLDEK YRKLRCDIDP IPHDSEDFRL IKKYLLTTHA PTHTDWSLEL EEVFALEREG  780
EFDKFAPYRK KLNNRMLLWH GSRFTNFFGK GIYFADLVSK SAQYCYTDKK NPVGLMLLSE  840
VALGEVHELK KATYMDKPPK GKHSTKGLGK KIPQESEYVK WKDDVIVPCG KPVPSNIKAS  900
ELMYNEYIVY DKAQVKMQFL LKVRFHHKRK IPAGMPQGDK LQQFPGPARF AAIHKVFGAS  960
NVSKLLLHVP VHDRCEAVVT IAYEAQARIR DPVYGCVAHI FSLQQQVACL QAQLMQVKAQ  1020
LAHQSLVDSR NIESTQWPGN VNGVTNFPNY PSYMNPISPQ SSLESIDHNC SDIAMNMQEI  1080
QSSRDDFSYQ ACSKRRPYNG DLGELQALAL RMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	5e-38	LBD family protein