PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1036160.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 1116aa MW: 126304 Da PI: 8.8506

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1036160.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79	7.9e-25	948	1022	27	101
DUF260 27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l ++k++l Pd.00g1036160.m02 948 PARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQL 1022 689*****************************************************************9999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1116 aa Download sequence
MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK 60 KAKQIKSSGI EVSPTSRATC KSCSQKILKA EVRISTKPEG QGPRGLAWHH ANCFMELSPS 120 TEVEKLSGWE TLPVADQAAV RALVKKVPSN ARGGKKTEEQ EDKEFLQQST PKTSTKRRKD 180 SGGDQQSKVA RLEGDVSTSW DVSARDATDL ESKLEAQTKE LWALKDDLKK HVTTAELREM 240 LEANVQDSTG SELDLRERCA DGMMFGALSR CPICSGFLRY SGGMYRCHGY ISEWSKCSYS 300 TEEPERLKWK WKIPEDTDNQ YLNKWFKSQK VEKPVRILPP STPNKPSGSQ AFNGQSQSSN 360 SANLADLKVA FRGLPQESME EWSRKIEGVA GLVHSKIKKD TNCLVVSGAL DDKDAEMRKA 420 RRMKLPIVRE DYLVDCFKKQ KKLPFDLYKV EVVGEASSMV TVKVKGRSAV HESSGLQDTC 480 HILEDGKSIY NTTLSMSDLS TGVNSYYILQ IIQDDKSSDC YVFRKWGRVG NDKIGGNKLE 540 EMSKSDAICE FKRLFLEKTG NSWEAWEQKQ HFQKQPGRFF PLDIDYGVNK QVSKKNQNNA 600 ASKLAPPLAE LMKMLFNVET YRAAMMEFEI NMSEMPLGKL STSNIQKGFE ALTEIQNLLN 660 SNGHAPSMKE SLIVDASNRF FTVIPSIHPR VIRDEDDFKS KVKMLEALQD IEIASRLVGF 720 DADTDDSLDE KYRKLRCDID PIPHDSEDFR LIKKYLLTTH APTHTDWSLE LEEVFALERE 780 GEFDKFAPYR KKLNNRMLLW HGSRFTNFFG KGIYFADLVS KSAQYCYTDK KNPVGLMLLS 840 EVALGEVHEL KKATYMDKPP KGKHSTKGLG KKIPQESEYV KWKDDVIVPC GKPVPSNIKA 900 SELMYNEYIV YDKAQVKMQF LLKVRFHHKR KIPAGMPQGD KLQQFPGPAR FAAIHKVFGA 960 SNVSKLLLHV PVHDRCEAVV TIAYEAQARI RDPVYGCVAH IFSLQQQVAC LQAQLMQVKA 1020 QLAHQSLVDS RNIESTQWPG NVNGVTNFPN YPSYMNPISP QSSLESIDHN CSDIAMNMQE 1080 IQSSRDDFSY QACSKRRPYN GDLGELQALA LRMMRN

Sequence ? help Back to Top

Protein Sequence Length: 1116 aa Download sequence

MANPQPPKPW KVEYAKSSRS SCKTCKSPIE KEKLRLGKMV TATQFDGFMP MWNHADCIMK  60
KAKQIKSSGI EVSPTSRATC KSCSQKILKA EVRISTKPEG QGPRGLAWHH ANCFMELSPS  120
TEVEKLSGWE TLPVADQAAV RALVKKVPSN ARGGKKTEEQ EDKEFLQQST PKTSTKRRKD  180
SGGDQQSKVA RLEGDVSTSW DVSARDATDL ESKLEAQTKE LWALKDDLKK HVTTAELREM  240
LEANVQDSTG SELDLRERCA DGMMFGALSR CPICSGFLRY SGGMYRCHGY ISEWSKCSYS  300
TEEPERLKWK WKIPEDTDNQ YLNKWFKSQK VEKPVRILPP STPNKPSGSQ AFNGQSQSSN  360
SANLADLKVA FRGLPQESME EWSRKIEGVA GLVHSKIKKD TNCLVVSGAL DDKDAEMRKA  420
RRMKLPIVRE DYLVDCFKKQ KKLPFDLYKV EVVGEASSMV TVKVKGRSAV HESSGLQDTC  480
HILEDGKSIY NTTLSMSDLS TGVNSYYILQ IIQDDKSSDC YVFRKWGRVG NDKIGGNKLE  540
EMSKSDAICE FKRLFLEKTG NSWEAWEQKQ HFQKQPGRFF PLDIDYGVNK QVSKKNQNNA  600
ASKLAPPLAE LMKMLFNVET YRAAMMEFEI NMSEMPLGKL STSNIQKGFE ALTEIQNLLN  660
SNGHAPSMKE SLIVDASNRF FTVIPSIHPR VIRDEDDFKS KVKMLEALQD IEIASRLVGF  720
DADTDDSLDE KYRKLRCDID PIPHDSEDFR LIKKYLLTTH APTHTDWSLE LEEVFALERE  780
GEFDKFAPYR KKLNNRMLLW HGSRFTNFFG KGIYFADLVS KSAQYCYTDK KNPVGLMLLS  840
EVALGEVHEL KKATYMDKPP KGKHSTKGLG KKIPQESEYV KWKDDVIVPC GKPVPSNIKA  900
SELMYNEYIV YDKAQVKMQF LLKVRFHHKR KIPAGMPQGD KLQQFPGPAR FAAIHKVFGA  960
SNVSKLLLHV PVHDRCEAVV TIAYEAQARI RDPVYGCVAH IFSLQQQVAC LQAQLMQVKA  1020
QLAHQSLVDS RNIESTQWPG NVNGVTNFPN YPSYMNPISP QSSLESIDHN CSDIAMNMQE  1080
IQSSRDDFSY QACSKRRPYN GDLGELQALA LRMMRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42430.1	5e-38	LBD family protein