PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1039060.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 152aa MW: 17841.3 Da PI: 9.0116

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1039060.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.2	1.2e-19	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krien+snrqvt+skRrngi+KKA+E+ vLCda+ Pd.00g1039060.m01 9 KRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAK 42 79******************************96 PP
2	K-box	45.3	3.7e-16	40	120	13	94
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel..lleqieelqkkekelqeenkaL 94 +a++l++e++++kk ++++q e+Rhl+ ed++sL++keL+ Le++Le++l + R+ +e+ l+ ++ k+e +++e+ ++L Pd.00g1039060.m01 40 DAKNLSNEVDRVKKDNDSMQVELRHLKAEDITSLTHKELMALENALENGLASDRALEEEHkrLTYEL---HKQEMKIEENVREL 120 4589***********************************************9998766651144444...44444444444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEITVLCD AKNLSNEVDR VKKDNDSMQV 60 ELRHLKAEDI TSLTHKELMA LENALENGLA SDRALEEEHK RLTYELHKQE MKIEENVREL 120 ENGYHQRLGN YNNQIPFAFR VQPIQPNLQE RM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	5e-51	MIKC_MADS family protein