PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1040700.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 723aa    MW: 80377.3 Da    PI: 6.1752
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1040700.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.28.8e-2175125656
                        S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        ++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Pd.00g1040700.m01  75 RHTTEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 125
                        579********************************************9877 PP
2START233.65.3e-732394622206
                        HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        + ++a++el k+a+a+ep+Wv+s+    e++n+de++++f  +        +s+ea+r++gvv+ ++++lv++++d++ qW+e+++    ka
  Pd.00g1040700.m01 239 IVNQAMEELKKMATAGEPLWVRSVetgrEILNYDEYIKEFNIEIPgngrpkRSIEASRETGVVFVDMPRLVQSFMDVN-QWKEMFPcmisKA 329
                        56789***********************************9988899*******************************.************* PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                        +t++vis+g      ga+qlm+aelq+l+plvp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv
  Pd.00g1040700.m01 330 ATVDVISNGegdnrnGAVQLMFAELQMLTPLVPtREVYFVRCCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKV 420
                        ***************************************************************98.9************************* PP

                        EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        +wveh ++++++++ ++r +v+sgla+ga++wvatlq qce+
  Pd.00g1040700.m01 421 IWVEHLECQKSTIQTMYRTIVNSGLAFGARHWVATLQLQCER 462
                        ****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    
MGVDMSNNPP TSRTKDFFSS PALSLSLAGI FRDAGEAAAA SREVEEGDEG SGGAGSVRRR  60
EDTAEISSEN SGPARHTTEQ IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR  120
RTQIKAIQER HENSLLKGEM EKLRDENKAM REQINKSCCP NCGTATTSRD ASLTTEEQQL  180
RIENARLKSE VEKLRAALVK NPPGTSSPSC SSGHDQENRS SLDFYTGIFG LEKSRIMEIV  240
NQAMEELKKM ATAGEPLWVR SVETGREILN YDEYIKEFNI EIPGNGRPKR SIEASRETGV  300
VFVDMPRLVQ SFMDVNQWKE MFPCMISKAA TVDVISNGEG DNRNGAVQLM FAELQMLTPL  360
VPTREVYFVR CCKQLSAEQW AIVDVSIDKV EDNIDASLVK CRKRPSGCII EDKSNGHCKV  420
IWVEHLECQK STIQTMYRTI VNSGLAFGAR HWVATLQLQC ERLVFFMATN VPMKDSTGVA  480
TLAGRKSILK LAQRMTWSFC RAIGASSYHT WTKISSKTGD DIRIASRKNL NDPGEPLGVI  540
LCAVSSVWLP VCPYVLFDFL RDETRRNEWD IMLNGGPAQT IANLSKGQDR GNAVTIQTMK  600
SKENSMWILQ DTCINSYESM VVYAPVDITG MQSVMTGCDA SNIAILPSGF SILPDGLESR  660
PMVITSRQED RSSEGGTLLT AAFQILTNSS PTAKLTMESV ESVNTLISCT LRNIKTSLQC  720
EDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein