PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1041440.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 246aa    MW: 26622.3 Da    PI: 9.6418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1041440.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-1157103354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L  ++  +k+L
  Pd.00g1041440.m01  57 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLATVISQVKEL 103
                        58*************************8.....7********9999888777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MTKPTRSVTA TTTATIINTL LSNKAALVHS EKGELVKAPA RVGKKGVSEA KALAALKNHS  60
EAERRRRERI NAHLSTLRGL VPCTEKMDKA ALLATVISQV KELKKDALES SKGFLIPVDA  120
DEVQVEPYDT GAGDGTISVR ASVCCEYRSE LLSDLREALD SLHLKMVKAD IATLGNRVKN  180
VFVFTSCKER SNDADADAFQ LLASSVHQAL SSVLDKASAS PEYSPRTTLL SKRRRVSYFD  240
TSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368ERRRRE
2232236KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-35bHLH family protein