PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1041860.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 508aa MW: 54442.8 Da PI: 8.0155

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1041860.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	18	39	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +Lk+H+++H Pd.00g1041860.m01 18 TCQECGASFKKPAYLKQHMQSH 39 6*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MAEEADEDGE GEREKSNTCQ ECGASFKKPA YLKQHMQSHS LEVLFAIVPL SIGSHTKNSK 60 MREVSNLNGP VSGGRPPVKL HQVNLNHILL GLRCSHGHDL LDVDHTKDLM SILELTVPAG 120 WKVWGHFTEA NAKEADKLAN QLQSTGISSG GDGAATSSDL NLIKMHLVPY LTTQAKVTRE 180 PGAETKFKEI SNAYEVLSDD EKRSLYDKYG EAGLKGAGMG SGDFSNPFDL FESLFEGMGG 240 MGGMGGMGGM GGRGSRSRAV DGQDEYYNLV LNFKEAVFGV EKEIEISRLE SCGTCNGSGA 300 KPGTKPSRCS TCGGQGQVVQ SARTPLGVFQ QVMTCSSCGG SGETSIPCNT CSGDSRVRRT 360 KRISLKVPAG VDSGSRLRVR NEGNAGRRGG SPGDLFVIIE VIPDPVLKRD DTNILYTCKV 420 SYIDAILGTT IKVPTVDGMV DLKIPAGTQP NTTLVMAKKG VPLLNKSNMR GDQLVRVQVE 480 IPKRLSNDEK KLIEELASLS KGKATSRR

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MAEEADEDGE GEREKSNTCQ ECGASFKKPA YLKQHMQSHS LEVLFAIVPL SIGSHTKNSK  60
MREVSNLNGP VSGGRPPVKL HQVNLNHILL GLRCSHGHDL LDVDHTKDLM SILELTVPAG  120
WKVWGHFTEA NAKEADKLAN QLQSTGISSG GDGAATSSDL NLIKMHLVPY LTTQAKVTRE  180
PGAETKFKEI SNAYEVLSDD EKRSLYDKYG EAGLKGAGMG SGDFSNPFDL FESLFEGMGG  240
MGGMGGMGGM GGRGSRSRAV DGQDEYYNLV LNFKEAVFGV EKEIEISRLE SCGTCNGSGA  300
KPGTKPSRCS TCGGQGQVVQ SARTPLGVFQ QVMTCSSCGG SGETSIPCNT CSGDSRVRRT  360
KRISLKVPAG VDSGSRLRVR NEGNAGRRGG SPGDLFVIIE VIPDPVLKRD DTNILYTCKV  420
SYIDAILGTT IKVPTVDGMV DLKIPAGTQP NTTLVMAKKG VPLLNKSNMR GDQLVRVQVE  480
IPKRLSNDEK KLIEELASLS KGKATSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	9e-10	C2H2 family protein