PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1043280.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 357aa MW: 39365.8 Da PI: 9.3542

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1043280.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	63	83	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Pd.00g1043280.m01 63 CEICGKGFQRDQNLQLHRRGH 83 *******************88 PP
2	zf-C2H2	13.3	0.00024	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pd.00g1043280.m01 137 WKCDKCSKRYAVQSDWKAHSKTC 159 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MALNEESIPP MNGFVQDPAA GSISPPPPPP AKKKRNLPGN PDPEAEVIAL SPKTLMATNR 60 FLCEICGKGF QRDQNLQLHR RGHNLPWKLK QRTNKEPRKR VYVCLEKSCV HHHPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ETARVNAASN MNNIPMGGNI NYQYMGYSIG AVGGPNNNIT AQQYFSSIFK 240 PMISTPNNID DEASRGLSKM SATALLQKAA QIGSTTSSEA PLLGSFGMNN ISKVCGLYGV 300 TSPDDHGHDH HAKRRSIQNC AASTALERCC QGISLDNGIE ASWRCPQGVV RQDMGHV

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MALNEESIPP MNGFVQDPAA GSISPPPPPP AKKKRNLPGN PDPEAEVIAL SPKTLMATNR  60
FLCEICGKGF QRDQNLQLHR RGHNLPWKLK QRTNKEPRKR VYVCLEKSCV HHHPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ETARVNAASN MNNIPMGGNI NYQYMGYSIG AVGGPNNNIT AQQYFSSIFK  240
PMISTPNNID DEASRGLSKM SATALLQKAA QIGSTTSSEA PLLGSFGMNN ISKVCGLYGV  300
TSPDDHGHDH HAKRRSIQNC AASTALERCC QGISLDNGIE ASWRCPQGVV RQDMGHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-120	C2H2 family protein