PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1058270.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 686aa MW: 75816.8 Da PI: 7.674

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1058270.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	62	83	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Pd.00g1058270.m01 62 KCDKCPREFCSSINYRRHIRVH 83 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MKSEEGNDSL DTIIRQVAKE PSISFSRAGD SPVPWIQLLH ALDQQELPGW PLHSPIKVQL 60 QKCDKCPREF CSSINYRRHI RVHHRLKKLD KDSSKNRELL GAFWDKLSPE EAKEAASFKN 120 VTLEEVPGSS IIKALTTHIR KPGFSSMPHI YLKAGSALLD IVQARPSRFP ISSQELFSIL 180 DDASEKTFLS GTAISMQRYI FDGEAGKVGL ESKNLVACTS FLVEQKLVKA WHADKDAEAL 240 RLQKLLVEEE EAAQRRQAEL MERKRQKKLR QKEQKAKDQS HGVKVDVKEN IDETLEAEPL 300 VETSSPSATF DSDTTSSDVQ AHDSLSLEAF QLSTADENVD PESQTEFIHG HTDSVSGPNV 360 ERRMVQGSGC RRAVVARWQV LSKSQRGVPH GFHGGQSSQT SKLSSIQNHG NHRDSRAASS 420 GNKVWSRKPK PEYDGGSLKA GVQKEATEPD QIKNQEVLIG SISVNLGNCS QESDNLAGVD 480 DDCLLEHQFP KNNAHDKTNK PDLVHSGTNR STVKLWRPVS RHGTKGPMAI QNGNRASEID 540 VVAEKGNSQN PSSENCPRSC VMDGGNDGNG NGSTRLDETG SLRFSSRAAK DFLAQRWKEA 600 IAADHVELVL LQDSEPPRCP DNQNDGEVES SHSLKFKRSI LGNAENRLVN VEGLEFPTAG 660 AAKVKHRTKP EKGLKIKYIP KQSTVT

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MKSEEGNDSL DTIIRQVAKE PSISFSRAGD SPVPWIQLLH ALDQQELPGW PLHSPIKVQL  60
QKCDKCPREF CSSINYRRHI RVHHRLKKLD KDSSKNRELL GAFWDKLSPE EAKEAASFKN  120
VTLEEVPGSS IIKALTTHIR KPGFSSMPHI YLKAGSALLD IVQARPSRFP ISSQELFSIL  180
DDASEKTFLS GTAISMQRYI FDGEAGKVGL ESKNLVACTS FLVEQKLVKA WHADKDAEAL  240
RLQKLLVEEE EAAQRRQAEL MERKRQKKLR QKEQKAKDQS HGVKVDVKEN IDETLEAEPL  300
VETSSPSATF DSDTTSSDVQ AHDSLSLEAF QLSTADENVD PESQTEFIHG HTDSVSGPNV  360
ERRMVQGSGC RRAVVARWQV LSKSQRGVPH GFHGGQSSQT SKLSSIQNHG NHRDSRAASS  420
GNKVWSRKPK PEYDGGSLKA GVQKEATEPD QIKNQEVLIG SISVNLGNCS QESDNLAGVD  480
DDCLLEHQFP KNNAHDKTNK PDLVHSGTNR STVKLWRPVS RHGTKGPMAI QNGNRASEID  540
VVAEKGNSQN PSSENCPRSC VMDGGNDGNG NGSTRLDETG SLRFSSRAAK DFLAQRWKEA  600
IAADHVELVL LQDSEPPRCP DNQNDGEVES SHSLKFKRSI LGNAENRLVN VEGLEFPTAG  660
AAKVKHRTKP EKGLKIKYIP KQSTVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	269	ERKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-138	C2H2 family protein