PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1059000.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARR-B
Protein Properties Length: 752aa    MW: 82013.5 Da    PI: 4.8287
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1059000.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.91.3e-24210263155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kp+++Wt+ LH++F+ a++++ G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Pd.00g1059000.m01 210 KPKVVWTNSLHNQFLLAIKHI-GLDKAVPKRILEFMNVPGLTRENVASHLQKYRI 263
                        79*******************.********************************6 PP
2Myb_DNA-binding27.29.2e-09213262248
                        SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                          WT  ++ +++ a+k  G +   +k+I + m+  g+t++++ s++qky+
  Pd.00g1059000.m01 213 VVWTNSLHNQFLLAIKHIGLDkaVPKRILEFMNvPGLTRENVASHLQKYR 262
                        68***********************************************7 PP
3Response_reg74.93e-25271351109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        +l+vdD+ + + ++  +l+   y +v +++++ +al++l++++  +Dl+++D+ mp+m+G+el k+ +ee  klp+i+++a ++e+ +l+ l
  Pd.00g1059000.m01  27 ILVVDDDATTLAIVSAMLKTWSY-QVVSVRNPIDALATLRARKgiFDLVVTDLHMPQMNGFELQKHVHEEF-KLPVIMMSADDKESVILKSL 116
                        89*********************.9999***********99999*************************99.******************** PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + G+  +++Kp++++++ +
  Pd.00g1059000.m01 117 EGGVLYYIVKPVSKDDIKN 135
                        ***************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    
MDAATERSEF RQSSANTKPS FVDMINILVV DDDATTLAIV SAMLKTWSYQ VVSVRNPIDA  60
LATLRARKGI FDLVVTDLHM PQMNGFELQK HVHEEFKLPV IMMSADDKES VILKSLEGGV  120
LYYIVKPVSK DDIKNVWQYA VAAKKGKSVT IEEIESAPGE APGEVEDGSS ETSSDTDEEK  180
QEKKAEAKVK KERKRHREDD NEERMVAPKK PKVVWTNSLH NQFLLAIKHI GLDKAVPKRI  240
LEFMNVPGLT RENVASHLQK YRIFLKRVAE KARLSKCLSE RVFRSSFALG HPALVFNNVQ  300
RDQYYSPLLN PQQMGTSIAS TFQPSAGNGN TLVLTAAASN NLGSIQFPNY HQSSSSNSSR  360
SFPQLIGSGQ LRLLSNNQAN ILCQQPMLGN GNGDQLLCQA NSRTAAFGVQ QLMNTFGNGG  420
MSFGLTNNNF GLTNNNIGTN SLMQVHPQQS QPRQNGVFTF TNNPFSYNFA TSGNQISSSY  480
TPLSSSFENM GSNVNNVNQR VPNSSPQLVS NFAGSQIMSS SGRELVGLMG SQPAGMLNNI  540
TNNINIGGGY PNVSLTGAPI GNNNGIFNSG YMAQLGASSS SMSSSAGFEI SASSAYQFPP  600
SLLKNNGDDQ QQNVPVLPPP AGNVNDQCGL ANMNVGGGNV EISVSGVMDN TIITDAPPTL  660
INNNNISHER ELVGDIDDLM LSNLFMDQQN NYEPSPPPFK QQQEEGGDQQ VVNPEFDGNV  720
FDSEDYSILF DPEHPFQDCD DDFLNAILDS DM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-56ARR-B family protein