PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1062550.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 281aa    MW: 31475 Da    PI: 8.0891
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1062550.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00069727323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C++C+k+F +   +  H+r+H
  Pd.00g1062550.m01  7 CKICNKRFANGKAMGGHMRSH 27
                       *******************99 PP
2zf-C2H213.40.00024178200123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ C+k F++   L  H  +H
  Pd.00g1062550.m01 178 YKCETCNKAFRSYQALGGHRASH 200
                        9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MEKHRICKIC NKRFANGKAM GGHMRSHLAK LPLPAKPQSP QQRQQQLSNS PESSPPLSST  60
NRAMHSSPSL DSAIHDGDSD TDSHPRNPTR RRSKRRRKVI GKAAEAALEA EQVSSVSDAF  120
STEDVARCLI MLSMDKWGKW EKAKLKKEVD ESVDEDEDED EDESAFRAQT GALTQGKYKC  180
ETCNKAFRSY QALGGHRASH KKIIKTQRTF ECSFCFKQFD SGQALGGHKK VHYYNNLTHN  240
ARNVSSSSTN FVDNLVIDLN LPAPEEEDGE LSQLEFSTFS D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-34C2H2 family protein