PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1063550.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 1020aa MW: 114746 Da PI: 7.5754

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1063550.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.6	1.6e-08	329	387	22	81
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++ + e++ +y Pd.00g1063550.m01 329 TRSKTRADKDREVAEFLQKHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQV-GKSY 387 56788889999*************************************9755444.3445 PP

Sequence ? help Back to Top
Protein Sequence Length: 1020 aa Download sequence
MSAKAEMEFA VEVEILGRVR HRNLLGLRGF YAGGEERLIV YDYMPNHSLI THLHGQLAAD 60 CLLDWPRRMS IAIGSAEDSR LKGKFDREQV KSTVLIAMKC TDNSPENRPT MVEVVAWLKG 120 DQLLPTEITR PRHHQPQPPP AAAPFNIPAP LFVPSVAATS SSSPFDQQHF EAAVNPKRPR 180 YTTGQWKLLP SPSSQTKQTQ IPILAKESTP SPNPRCTQLP QPHVTPTGAA SSSDTASSPP 240 AHSPLPSLSA TSGQDTNKTE GDLQNPVHNH PFRKGKYVSP VWKPNEMLWL ARGWRIQYQG 300 GPAGGSSDHG SGSSSRTEQI PTETGTPHTR SKTRADKDRE VAEFLQKHGV NRDAKTAGTK 360 WDNMLGEFRK VYEWERGAER EQVGKSYFRL SPYERKLHRL PASFDEEVFE ELSQFMGSRM 420 RTPQSRLGSA GDDSRSAFVV TRSLTQPPSF KEDEFPPSGS KKQLMIMSRG GEPFYHGGRG 480 TLLGFHHHDQ SSLDFTAGLS SSSASKELRR IGKIRMTWEE LVSLWAEEGE HHRGRVRLQG 540 SSFLNADELT FFDDSMVACT MEAFEDGPLR GFSVDRFVSG QQVKVFGRRK PSSSTSGFNE 600 KVQLSLPESS SRSIPSTEFQ DPTEYYVGCL GAPPPSLPSL PELQWYLQEP PPEELRFPLR 660 KDVYRDLPQG KEIFFTTSTE LLDCRAITYD ILSPIIRTNP SLSASTATSR DSFIPIWDDC 720 INRLVSKFCS LEMVFIRRPN ASSPTEPLQD QWPNVTGFVR NFCLWRGEET DQLRDSHDMN 780 PSSSIVEKIL WTYMDLPYIF GYYAIGYVVT FCALSRSQDR INRTDLATID LSSPSERLKA 840 LVPCYRIAGL LPLLADRCFN NTNCNKLLPH SDFERLDLGN GRNIVEMTPT TVTRFFSNVR 900 KWTAVKEIYD FLDHRIPHAE FIHRSLEKDL GLVFKPRGCK CKPTNCEQLV EALKYVTKAL 960 VALHDLSFMH RDISWEKVMR RTERENEWFV CGFEEAGVCW GGEMAAVAPA STGCRGSSYG

Sequence ? help Back to Top

Protein Sequence Length: 1020 aa Download sequence

MSAKAEMEFA VEVEILGRVR HRNLLGLRGF YAGGEERLIV YDYMPNHSLI THLHGQLAAD  60
CLLDWPRRMS IAIGSAEDSR LKGKFDREQV KSTVLIAMKC TDNSPENRPT MVEVVAWLKG  120
DQLLPTEITR PRHHQPQPPP AAAPFNIPAP LFVPSVAATS SSSPFDQQHF EAAVNPKRPR  180
YTTGQWKLLP SPSSQTKQTQ IPILAKESTP SPNPRCTQLP QPHVTPTGAA SSSDTASSPP  240
AHSPLPSLSA TSGQDTNKTE GDLQNPVHNH PFRKGKYVSP VWKPNEMLWL ARGWRIQYQG  300
GPAGGSSDHG SGSSSRTEQI PTETGTPHTR SKTRADKDRE VAEFLQKHGV NRDAKTAGTK  360
WDNMLGEFRK VYEWERGAER EQVGKSYFRL SPYERKLHRL PASFDEEVFE ELSQFMGSRM  420
RTPQSRLGSA GDDSRSAFVV TRSLTQPPSF KEDEFPPSGS KKQLMIMSRG GEPFYHGGRG  480
TLLGFHHHDQ SSLDFTAGLS SSSASKELRR IGKIRMTWEE LVSLWAEEGE HHRGRVRLQG  540
SSFLNADELT FFDDSMVACT MEAFEDGPLR GFSVDRFVSG QQVKVFGRRK PSSSTSGFNE  600
KVQLSLPESS SRSIPSTEFQ DPTEYYVGCL GAPPPSLPSL PELQWYLQEP PPEELRFPLR  660
KDVYRDLPQG KEIFFTTSTE LLDCRAITYD ILSPIIRTNP SLSASTATSR DSFIPIWDDC  720
INRLVSKFCS LEMVFIRRPN ASSPTEPLQD QWPNVTGFVR NFCLWRGEET DQLRDSHDMN  780
PSSSIVEKIL WTYMDLPYIF GYYAIGYVVT FCALSRSQDR INRTDLATID LSSPSERLKA  840
LVPCYRIAGL LPLLADRCFN NTNCNKLLPH SDFERLDLGN GRNIVEMTPT TVTRFFSNVR  900
KWTAVKEIYD FLDHRIPHAE FIHRSLEKDL GLVFKPRGCK CKPTNCEQLV EALKYVTKAL  960
VALHDLSFMH RDISWEKVMR RTERENEWFV CGFEEAGVCW GGEMAAVAPA STGCRGSSYG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-08	Trihelix family protein