PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1063610.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27721.4 Da    PI: 8.302
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1063610.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.71e-30958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       +rienk+nrqvtfskRrng+lKKA+ELSvLCda+va+ii ss+gklye+ 
  Pd.00g1063610.m01  9 ERIENKINRQVTFSKRRNGLLKKAYELSVLCDAQVALIISSSRGKLYEFG 58
                       69**********************************************95 PP
2K-box94.41.8e-31791718100
              K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        +++e+++++l+qe++kLk ++e+Lq +qRhllGedLe+L lkeL +Le+qL+k l+k+R++K+e+l++ +eel++ke++l e+nk+L+++le
  Pd.00g1063610.m01  79 NVAENETQNLYQEVSKLKVKYESLQLSQRHLLGEDLEKLRLKELVNLENQLDKTLSKVRQRKTEMLYDRLEELRQKENDLGEKNKQLKSELE 170
                        38999************************************************************************************998 PP

              K-box 100 e 100
                        e
  Pd.00g1063610.m01 171 E 171
                        6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGRGRVVLER IENKINRQVT FSKRRNGLLK KAYELSVLCD AQVALIISSS RGKLYEFGST  60
DVNKILERYR QCCYSLQGNV AENETQNLYQ EVSKLKVKYE SLQLSQRHLL GEDLEKLRLK  120
ELVNLENQLD KTLSKVRQRK TEMLYDRLEE LRQKENDLGE KNKQLKSELE EEEHAQATLQ  180
GPGELPLTKD NRIESEHPSL RLQIWDHQPV PQEKAADDDQ GRTMVGGSKS NCNQRGWLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-69MIKC_MADS family protein