PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1069630.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Whirly
Protein Properties Length: 274aa    MW: 30090.2 Da    PI: 10.1527
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1069630.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly216.91.9e-67972351139
             Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrk 92 
                        s+yk+kaal+v++++p+f+aldsg++kl+r+G++ll++a+a+++r ydW++kq+f+ls+te+++lv l+skes effhdp++++s+eGkvrk
  Pd.00g1069630.m01  97 SIYKGKAALTVEPKAPEFTALDSGAFKLSREGFVLLQFAPAAGVRVYDWSRKQVFSLSVTEIGSLVCLGSKESIEFFHDPFKGKSDEGKVRK 188
                        7******************************************************************************************* PP

             Whirly  93 alkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                        +lkvePlpdGsG+f+nlsv+n+l++ +es+++P+++aefavl+s+++
  Pd.00g1069630.m01 189 VLKVEPLPDGSGHFFNLSVQNKLINLDESVYIPITRAEFAVLKSAFN 235
                        ********************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MLRLHSLSSP AVAAQNPKQC LASELSSRAR VFSTNSFGFA PSLSSSRKRL SLKCRQSEYF  60
DQQRASTASA PNKPSPPAPQ TPAGGTGLPP RFFVGHSIYK GKAALTVEPK APEFTALDSG  120
AFKLSREGFV LLQFAPAAGV RVYDWSRKQV FSLSVTEIGS LVCLGSKESI EFFHDPFKGK  180
SDEGKVRKVL KVEPLPDGSG HFFNLSVQNK LINLDESVYI PITRAEFAVL KSAFNFILPY  240
ILGWHAYANS IKPEDSSRMN NSSSRYGGDF EWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-119Whirly family protein