PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1073460.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 139aa    MW: 15414.7 Da    PI: 8.1208
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1073460.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601438.9e-4561051100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +Ca+Ck+lrr+CakdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ 
  Pd.00g1073460.m01   6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFALVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISFLQSQVSQLQM 97 
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la++++e
  Pd.00g1073460.m01  98 QLAVAQAE 105
                        ****9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    
MGGTSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFALVHK VFGASNVSKM LQELPIHQRG  60
DAVSSLVYEA NARVRDPVYG CVGAISFLQS QVSQLQMQLA VAQAEILCIQ MQQEPQYFSS  120
FASSSNVIQD PLKRESLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.18e-64LBD family protein