PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1074840.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 568aa MW: 61734.7 Da PI: 7.9018

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1074840.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.0004	64	84	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k Fs+ L H+r+H Pd.00g1074840.m02 64 CEVCNKGFSSGKALGGHMRMH 84 ********************9 PP
2	zf-C2H2	15.8	3.9e-05	138	158	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F++ +L H+r+H Pd.00g1074840.m02 138 CCVCGKNFPSMKSLFGHMRSH 158 9*******************9 PP
3	zf-C2H2	11.2	0.0011	431	443	1	13
EEETTTTEEESSH CS zf-C2H2 1 ykCpdCgksFsrk 13 ykC+ CgksF++ Pd.00g1074840.m02 431 YKCSLCGKSFPTA 443 9*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MDIEDQETRF RPRAGDQEQQ PNKKANQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF 60 TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKIQ KPTKILKPNN SDVSSSNGGG 120 GFGVEGNSNS NSSMKPDCCV CGKNFPSMKS LFGHMRSHPE REWRGIQPPP TIAKNSSSST 180 LSDAVPQNNN KADDHQIDSA ATPVGSNNSA PDLSKTLPGW SLTARRGRKS IGSSGNSESV 240 SGLDLSLGVE EQMEEAVHDL LMLAQSNPSF YGLSDKGKGA EMCEATNSNF FITNNSNQAD 300 YIKDKNQVID YEGTSKKRKG TEMCFPSKNM KSEKKWFDEY DSVKGKGVLG IGFGPEKSSV 360 KNFLKLGPME DNKNNNIEEE LSDSQNSESI VLASMKRRKR RKMKLVDLEG VVGEIIGAQG 420 HHQSLHQKLR YKCSLCGKSF PTAEGGHNLD EAQTTMALDQ DHHVAGAGSG SGAGGLGAHQ 480 AHHQCKICDK IFPTGQALGG HKRCHWTGPT EQLLPQSSQA ASPGEASQNA GRKVLNFDLN 540 ELPAMEFEEG TDQYGAAGYA TSSHNSVT

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MDIEDQETRF RPRAGDQEQQ PNKKANQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF  60
TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKIQ KPTKILKPNN SDVSSSNGGG  120
GFGVEGNSNS NSSMKPDCCV CGKNFPSMKS LFGHMRSHPE REWRGIQPPP TIAKNSSSST  180
LSDAVPQNNN KADDHQIDSA ATPVGSNNSA PDLSKTLPGW SLTARRGRKS IGSSGNSESV  240
SGLDLSLGVE EQMEEAVHDL LMLAQSNPSF YGLSDKGKGA EMCEATNSNF FITNNSNQAD  300
YIKDKNQVID YEGTSKKRKG TEMCFPSKNM KSEKKWFDEY DSVKGKGVLG IGFGPEKSSV  360
KNFLKLGPME DNKNNNIEEE LSDSQNSESI VLASMKRRKR RKMKLVDLEG VVGEIIGAQG  420
HHQSLHQKLR YKCSLCGKSF PTAEGGHNLD EAQTTMALDQ DHHVAGAGSG SGAGGLGAHQ  480
AHHQCKICDK IFPTGQALGG HKRCHWTGPT EQLLPQSSQA ASPGEASQNA GRKVLNFDLN  540
ELPAMEFEEG TDQYGAAGYA TSSHNSVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	346	KKRKGTEMCFPSKNMKSEKKWFDEYDSVKGK
2	396	402	KRRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	6e-17	C2H2 family protein