PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1079640.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 785aa MW: 85863.2 Da PI: 5.9406

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1079640.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.7e-06	362	382	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg Pd.00g1079640.m01 362 PCPEFRK-GACRQGDACEYAHG 382 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence
MRAPHDGRLF GPFYDVINPT ENSNCFAGET KARVLESIEP LSFVDAFKNS KSLVVWFKEE 60 ELGFLSHSVF CSFYHFSVVR KGEISMCSGS KRKPSSTDLI MEREKQEGMR YSFSILLELS 120 ASDDLDGFKR AVEEEGHDVD EASYWYGRLI GSKKMGFEER TPLMIAAMFG SKNVLNYILQ 180 TCLVDVNRAC GSDRATALHC AAGGGSSASA EVVKLLLATS ADASSLDANG NQAGDLIAPA 240 YSSTFNSRKK ALEVMLKGVP SIDEPFDFSE QMVYETEGQE QQEITTPRAS KDGTEKKEYP 300 IDLSLPDIKN GIYSTDEFRM YTFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC 360 VPCPEFRKGA CRQGDACEYA HGIFECWLHP AQYRTRICKD ETGCTRRVCF FAHKPEELRP 420 LYASTGSAVP SPRSFSANAS SLDMGSISPL SLNSPSMLIP PASTPPMTPS GASSPRSGNM 480 WQNLPNIAPP TLQLPGSRLK STLSARDMDL DIELLSLESH RRRQQRLIDE ISGSPSSWNT 540 GLSSPSAFAA SGNRTGELNR IGGVNPTNLD DIFGSLDPAI LPQYNGPASQ LHSPTGIQMR 600 QNMNLQPRPS YSASLSSSPV RASPLFGADA SSAAAVFISR SAAFAKRSQS FIERSAGNRN 660 PGFSSPADSG TLMPSNVSDW GSPGGKLDWG MQGEELNKLR KSASFGFRSS GSSFSNAPTM 720 MPGAADEPDV SWVQSLVKDA PPPSQLGQFG FEDQQQPQCH PNNGGPEMLP AWVEQLYLEQ 780 EQMVA

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence

MRAPHDGRLF GPFYDVINPT ENSNCFAGET KARVLESIEP LSFVDAFKNS KSLVVWFKEE  60
ELGFLSHSVF CSFYHFSVVR KGEISMCSGS KRKPSSTDLI MEREKQEGMR YSFSILLELS  120
ASDDLDGFKR AVEEEGHDVD EASYWYGRLI GSKKMGFEER TPLMIAAMFG SKNVLNYILQ  180
TCLVDVNRAC GSDRATALHC AAGGGSSASA EVVKLLLATS ADASSLDANG NQAGDLIAPA  240
YSSTFNSRKK ALEVMLKGVP SIDEPFDFSE QMVYETEGQE QQEITTPRAS KDGTEKKEYP  300
IDLSLPDIKN GIYSTDEFRM YTFKVKPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC  360
VPCPEFRKGA CRQGDACEYA HGIFECWLHP AQYRTRICKD ETGCTRRVCF FAHKPEELRP  420
LYASTGSAVP SPRSFSANAS SLDMGSISPL SLNSPSMLIP PASTPPMTPS GASSPRSGNM  480
WQNLPNIAPP TLQLPGSRLK STLSARDMDL DIELLSLESH RRRQQRLIDE ISGSPSSWNT  540
GLSSPSAFAA SGNRTGELNR IGGVNPTNLD DIFGSLDPAI LPQYNGPASQ LHSPTGIQMR  600
QNMNLQPRPS YSASLSSSPV RASPLFGADA SSAAAVFISR SAAFAKRSQS FIERSAGNRN  660
PGFSSPADSG TLMPSNVSDW GSPGGKLDWG MQGEELNKLR KSASFGFRSS GSSFSNAPTM  720
MPGAADEPDV SWVQSLVKDA PPPSQLGQFG FEDQQQPQCH PNNGGPEMLP AWVEQLYLEQ  780
EQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein