PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1081340.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 222aa    MW: 24843.7 Da    PI: 4.6789
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1081340.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-2066115255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a+  l+g
  Pd.00g1081340.m01  66 KFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAAVLLKG 115
                        89*******.**********84....34*********************987766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MVKFSEQVTT MTKLITHESQ NSPVNPTHLP PKLVRIILTD ADATDSSSDE EDSGVRRVKR  60
HTRRNKFRGV RRRPWGRWAA EIRDPTRRKR VWLGTFDTAE EAATVYDRAA VLLKGPDAVT  120
NFPNAAMTEA TVVTDVVVPA AEESYGCGSS TPNEAATSPT SVLRYDELTP FDGFRYGEVD  180
AFGFDIDLPL SLPDIMLSNN NNFAHDEFGE FDVNDFWVDV IC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15674RRVKRHTRRNKFRGVRRRP
25977RRVKRHTRRNKFRGVRRRP
37190RRRPWGRWAAEIRDPTRRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-28ERF family protein