PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1083850.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 258aa MW: 28664.1 Da PI: 7.9802

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1083850.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.9	4.3e-35	55	150	6	100
DUF260 6 kvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +lrrkC k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+aela+ Pd.00g1083850.m01 55 TFLRRKCIKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCVSHIFTLQQQVVNLQAELAY 146 589**************9989******************************************************************* PP DUF260 97 lkee 100 ++++ Pd.00g1083850.m01 147 VQAR 150 9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MYRILIDLSC CLEIGEGCSC GRGRTDEKMT SGSGSPRVNV IGLKRYLCVG LECYTFLRRK 60 CIKGCIFAPY FDSEQGTAHF AAVHKVFGAS NASKLLLRIP PHKRLDAVVT LCYEALARVR 120 DPVYGCVSHI FTLQQQVVNL QAELAYVQAR LATLQRTPPP PPLPQLECPP PPRSLHYSSS 180 HINVTSSPCS EFVPTSNLLT HFDPLQTVPH TAEMTSLFNS LDQELIDGED LQALAREFVC 240 RYLPGVRLNK PSTSHQNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	2e-63	LBD family protein