PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1085310.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 312aa MW: 33825 Da PI: 8.9224

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1085310.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.3e-19	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++vk +G+++W++I++ ++ gR++k+c++rw + Pd.00g1085310.m01 12 KGPWSPEEDEALQKLVKNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	52.8	9e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++Ed+ +++a++++G++ W+tIar ++ gRt++ +k++w++ Pd.00g1085310.m01 66 PFSPDEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MASTKKVADR IKGPWSPEED EALQKLVKNY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 EVEHRPFSPD EDDTIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMSEDL 120 TPDVHSHPAH KRSASVGAVT AVSGLYLNPG SPSGSDMSDS SLPGIVSPTQ VFRPLVRTGP 180 LIAQPMEASS SAVDPPTSLS LSLPGSNSSD GSNHLASGFG SNPGVSPTSM VQQPQEAAAA 240 VAGAQLPRQS NQNSEMGYDQ QFFSSEFLDV MQEMIRKEVR NYMSGVEQTG LCMHTEAIRN 300 AVVKRIGISK IE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	6e-75	MYB family protein