PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1085830.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 223aa    MW: 23934.2 Da    PI: 8.4914
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1085830.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.91.8e-292102196
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C++ C+l+ ++     p++q +++ +++k+FG+s +l++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg+++++++++
  Pd.00g1085830.m01   2 SCNGCRVLRKGCSETCILRSCLqaidsPEAQGNATLFLAKFFGRSDLLSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHV 93 
                        6*********************9999999999************************************************************ PP

             DUF260  88 eqlkaelal 96 
                        +q+++e++l
  Pd.00g1085830.m01  94 CQSAVETVL 102
                        ****99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MSCNGCRVLR KGCSETCILR SCLQAIDSPE AQGNATLFLA KFFGRSDLLS FISAVPEPQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQSAVET VLSGGVLRPL TAVLTPSLHE  120
SSETSSRGAC TLQNLYYPPV PSAYYDEERI QPFDAGLSLK PNLAAGERGR GRGMRSSSCV  180
STAVGKRRRD TVSFSSEESV MTSTTSFERG GGLKDRKVLN LFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-64LBD family protein