PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1087110.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 197aa    MW: 22691.5 Da    PI: 7.0458
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1087110.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.39.1e-3761052101
             DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                        CaaC+++r+kC++dC +apyfpa++ ++f n+hklFG+ +++k+l+++++++r+ am s+  eAe rardPv G+++ i++l +++++++ e
  Pd.00g1087110.m01   6 CAACRFQRKKCTQDCLMAPYFPATRFQQFLNAHKLFGVGKITKTLNSVSPQQRSSAMYSVKAEAEYRARDPVGGCYNEIKSLLWKIRTTEDE 97 
                        ******************************************************************************************** PP

             DUF260  94 lallkeel 101
                        l++++++l
  Pd.00g1087110.m01  98 LQHVHSQL 105
                        ***99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MKHQTCAACR FQRKKCTQDC LMAPYFPATR FQQFLNAHKL FGVGKITKTL NSVSPQQRSS  60
AMYSVKAEAE YRARDPVGGC YNEIKSLLWK IRTTEDELQH VHSQLCMFRA GGENAMAHPL  120
ERYEYNVVQD VEYDSQLHHQ LQHNIVQEQS GVVENHQERS NVFDLRDEVV LEQDVNPIQD  180
EGPVIHNSTS QLQSGKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-39LBD family protein